View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_low_9 (Length: 462)
Name: NF4082_low_9
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 27228607 - 27228792
Alignment:
| Q |
8 |
tagcatagggtcctactaatagtagaataaaaacatgagacataaaattggagagagaataatgagcttttttatgtgttaactaaatagctagcaaatt |
107 |
Q |
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| T |
27228607 |
tagcatagggtcctactaatagtagaataaaaacatgagacataaaattggagagagaataatgagcttttttatgtgttaactaaatagctagcaaatt |
27228706 |
T |
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| Q |
108 |
tatatatattaaactgtttgttataaatatcatcacctagtctcaacctttctttttccaacatttgaaaaatagcacattgttat |
193 |
Q |
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| T |
27228707 |
tatatatattaaactgtttgttataaatatcatcacctagtctcaacctttctttttccaacatttgaaaaatagcacattgttat |
27228792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 274 - 446
Target Start/End: Original strand, 27228812 - 27228984
Alignment:
| Q |
274 |
gtgataaaagtttagactgtagagccaaaaattgagaaaataaagagaaaaagagaatattgcattactagaagaataacactacacgtaacagaagaat |
373 |
Q |
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| T |
27228812 |
gtgataaaagtttagactgtagagccaaaaattgagaaaataaagagaaaaagagaatattgcattactagaagaata--actacacgtaacagaagaat |
27228909 |
T |
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| Q |
374 |
aaaagcaattgaatggtccacacggcaataggaagtttcctagaacattttt-tcttaagtttt-tccttgtttt |
446 |
Q |
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| T |
27228910 |
aaaagcaattgaatggtccacacggcaataggaagtttcatagaacatttttgtcttaagttttctccttgtttt |
27228984 |
T |
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