View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4083_high_5 (Length: 323)
Name: NF4083_high_5
Description: NF4083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4083_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 33232214 - 33232510
Alignment:
| Q |
17 |
aagtggatccaagacttcacaagagcaattggaagcattaaaaaacatcaaaccatacaaaatgtggacgttaacattgattaccaccaactaggaaaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33232214 |
aagtggatccaagacttcacaagagcaattggaagcattaaaaaacatcaaaccatacaaaatgtggacgttaacattgattaccaccaactaggaaaaa |
33232313 |
T |
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| Q |
117 |
acaactcaacaaagatttcatacttttggatgggtatagatggaagaaaacaacaaaacaaaacatgcaaagacagcgtagactgtgagatacaaacagc |
216 |
Q |
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||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33232314 |
acaacccaacagagattccatacttttggatgggtatagatggaagaaaacaacaaaacaaaacatgcaaagacagcgtagactgtgagatacaaacagc |
33232413 |
T |
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| Q |
217 |
tgtacgaaagttgctatgtctcaaacaagacccattaggatgggttcttctaagtagagggcgtcatgttacagtttttggtcatggtgaacctatg |
313 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33232414 |
tgtaaaaaagttgctatgtctcaaacaagacccattaggatgggttcttctaagtagagggcgtcatgttacagtttttggtcatggtgaacctatg |
33232510 |
T |
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