View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4083_low_10 (Length: 255)
Name: NF4083_low_10
Description: NF4083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4083_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 254
Target Start/End: Complemental strand, 26076517 - 26076286
Alignment:
| Q |
24 |
ttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagtatccctctagcttagcctctcttttcttgttagtag |
123 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| ||||| |||| ||||||||||||||||||||||||| | ||| |||| | || || | || |
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| T |
26076517 |
ttgaataggtagccataagtgctcttcctatccattatatcttcacaccagtctgaatcagagtatccctctaattcagcttctcctactttatttgcag |
26076418 |
T |
|
| Q |
124 |
ctggaaacatcaggccaaacttcaaggt-cctttcacatttctcagtattcttttagctgcagcgagatgggatttccttggatcattcatgaatctact |
222 |
Q |
| |
|
||||||| | ||||||||||||||| || |||||||||| ||||| ||||||||||||||||| |||||| || |||||||||||||||||||||||||| |
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| T |
26076417 |
ctggaaataacaggccaaacttcaatgtacctttcacatatctcaatattcttttagctgcagtgagatgagacttccttggatcattcatgaatctact |
26076318 |
T |
|
| Q |
223 |
gatgatacttactacaaagcatatctctggtc |
254 |
Q |
| |
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||| ||||||||| |||||||||| ||||||| |
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|
| T |
26076317 |
gattatacttactgcaaagcatatatctggtc |
26076286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 4958422 - 4958645
Alignment:
| Q |
24 |
ttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagtatccctctagcttagcctctcttttcttgttagtag |
123 |
Q |
| |
|
||||||||||||| | | |||||| | |||||||||||||||||||| |||||||||||||||||||||||||| | ||| |||| || ||||| | || |
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| T |
4958422 |
ttgaataggtagctaaaggtgctttttctatccattctatctccacaccagtctgaatcagagtatccctctagttcagcttctccttctttgtttgcag |
4958521 |
T |
|
| Q |
124 |
ctggaaacatcaggccaaacttcaaggt-cctttcacatttctcagtattcttttagctgcagcgagatgggatttccttggatcattcatgaatctact |
222 |
Q |
| |
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||| || | |||||||||||||| || |||||||||| ||||| ||| ||||| ||||||| |||||| | |||||||||||||||||||||||||| |
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|
| T |
4958522 |
ttgggaataacaggccaaacttcagtgtgcctttcacatgtctcaatatcctttttgctgcagtgagatgaaacttccttggatcattcatgaatctact |
4958621 |
T |
|
| Q |
223 |
gatgatacttactacaaagcatat |
246 |
Q |
| |
|
||||||||||||| |||||||||| |
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|
| T |
4958622 |
gatgatacttactgcaaagcatat |
4958645 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 102 - 253
Target Start/End: Original strand, 32368534 - 32368686
Alignment:
| Q |
102 |
gcctctcttttcttgttagtagctggaaacatcaggccaaacttcaaggt-cctttcacatttctcagtattcttttagctgcagcgagatgggatttcc |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||| ||| |||||||||| ||||||||||||||||||| ||| |||||| ||||||| |
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|
| T |
32368534 |
gcctctcctttcttgttagtagctggaaacatcagggcaaacttcagggttcctttcacatatctcagtattcttttagctacagtgagatgagatttcc |
32368633 |
T |
|
| Q |
201 |
ttggatcattcatgaatctactgatgatacttactacaaagcatatctctggt |
253 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||| ||||| |||| |||||| |
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|
| T |
32368634 |
ttggatcattcatgaacctaccgatgatacttactgcaaaggatatatctggt |
32368686 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 32368391 - 32368525
Alignment:
| Q |
13 |
catcatttaatttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagtatccctctagcttagcctctctttt |
112 |
Q |
| |
|
||||||| |||||||||||| ||||| |||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| ||| |
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| T |
32368391 |
catcattgaatttgaataggcagccagaagtacttctcctatccattctatctccacaccggtctgaatcagagtatccctctagcttagactctccttt |
32368490 |
T |
|
| Q |
113 |
cttgttagtagctggaaacatcaggccaaacttca |
147 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
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|
| T |
32368491 |
cttgttagtagctggaaacatcgtgccaaacttca |
32368525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 254
Target Start/End: Complemental strand, 5243310 - 5243095
Alignment:
| Q |
40 |
aagtgcttctcctatccattctatctccacatcagtctgaatcagagtatccctctagcttagcctctcttttcttgttagtagctggaaacatcaggcc |
139 |
Q |
| |
|
|||||||||| ||||||||||| | |||||| ||||| ||||| |||||||| ||||||||||||| || || ||| || || || || || || || |
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|
| T |
5243310 |
aagtgcttcttctatccattctctatccacaccagtcagaatctgagtatccttctagcttagcctttccttcattgctatcagttgtaagcaacaaacc |
5243211 |
T |
|
| Q |
140 |
aaacttca-aggtcctttcacatttctcagtattcttttagctgcagcgagatgggatttccttggatcattcatgaatctactgatgatacttactaca |
238 |
Q |
| |
|
|||||| | || ||||||||||| ||||| |||| |||| ||||||| |||||| || ||||||||||||||||||||||| || |||||||||||| || |
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|
| T |
5243210 |
aaactttagagttcctttcacatatctcattattattttggctgcagtgagatgagacttccttggatcattcatgaatcttctaatgatacttactgca |
5243111 |
T |
|
| Q |
239 |
aagcatatctctggtc |
254 |
Q |
| |
|
|||||||| ||||||| |
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|
| T |
5243110 |
aagcatatatctggtc |
5243095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 152 - 254
Target Start/End: Complemental strand, 12370803 - 12370701
Alignment:
| Q |
152 |
cctttcacatttctcagtattcttttagctgcagcgagatgggatttccttggatcattcatgaatctactgatgatacttactacaaagcatatctctg |
251 |
Q |
| |
|
|||||||||| ||||| ||| ||||| | ||||| |||||| || |||||||||||||||||| |||||||||||||||||||| |||||||||| |||| |
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|
| T |
12370803 |
cctttcacatatctcaatatcctttttgatgcagtgagatgagacttccttggatcattcatgcatctactgatgatacttactgcaaagcatatatctg |
12370704 |
T |
|
| Q |
252 |
gtc |
254 |
Q |
| |
|
||| |
|
|
| T |
12370703 |
gtc |
12370701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 12370945 - 12370874
Alignment:
| Q |
24 |
ttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagtatccctctag |
97 |
Q |
| |
|
||||||||||||| | | |||||| |||| |||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
12370945 |
ttgaataggtagctagaggtgcttttcct--ccattctatctccacaccagtctgaatcagagtatccctctag |
12370874 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 151 - 246
Target Start/End: Complemental strand, 1182943 - 1182848
Alignment:
| Q |
151 |
tcctttcacatttctcagtattcttttagctgcagcgagatgggatttccttggatcattcatgaatctactgatgatacttactacaaagcatat |
246 |
Q |
| |
|
||||||||||| ||| || | |||||||||||||| |||||| |||||||| |||||||||||| ||||||||||||||||||| |||||||||| |
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|
| T |
1182943 |
tcctttcacatatcttagcactcttttagctgcagtgagatgagatttcctaggatcattcatgtatctactgatgatacttaccgcaaagcatat |
1182848 |
T |
|
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