View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4083_low_3 (Length: 434)
Name: NF4083_low_3
Description: NF4083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4083_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 50 - 420
Target Start/End: Complemental strand, 11776159 - 11775787
Alignment:
| Q |
50 |
gtaatgagtactatgcatgttcatcatgcatatgcaaatcatataatatatgtttggtttaaaacaatcatttgaccatttttgcaccactcatatcaaa |
149 |
Q |
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| T |
11776159 |
gtaatgagtactatgcatgtacatcatgcatatgcaaatgatataatatatgtttggtttaaaacaatcatttgaccatttttgcaccactcatatcaaa |
11776060 |
T |
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| Q |
150 |
gcttaatggaccataaacacccaatttatacatgaaattaatttcttattatgtcatataatgaacttgtgtttctaaaaagttgcaataaaccttattc |
249 |
Q |
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| T |
11776059 |
gctaaatggaccataaacacccaacttatacatgaaattaatttcttattatgt--tataatgaacttgtgtttctaaaacgttgcaataaatcttattc |
11775962 |
T |
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| Q |
250 |
acctagtatataagcaaataatataatcaagaaagaa----gagaaaattgaaaaatttcaataatcatttacaaaactagagatagatcttataggagt |
345 |
Q |
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| T |
11775961 |
accaagtatataagcaaataatatgatcaagaaagaaagaagagaaaattgaaaaatttcaataatcatttacaaaactagagatagatcttataggagt |
11775862 |
T |
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| Q |
346 |
gcttttccttggacgctttctcaaattcactctttcaccagattcatttggttcatcagtagaaatagatgactc |
420 |
Q |
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| T |
11775861 |
gcttttccttggacgctttctcaaattcactctttcaccagattcatttggttcatcagtagaaatagatgactc |
11775787 |
T |
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