View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4083_low_4 (Length: 429)
Name: NF4083_low_4
Description: NF4083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4083_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 110 - 276
Target Start/End: Original strand, 28597307 - 28597473
Alignment:
| Q |
110 |
gctacagaacttgatcaaaaatggagtatcatagtggtggaagtgggtcccctggtgnnnnnnnnnnnnnnnnnnnccatgaaggttcttctgagtctca |
209 |
Q |
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| T |
28597307 |
gctacagaacttgatcaaaaatggagtatcatagtggtggaagtgggtcccctggtgatcatcatcatcatcatcaccatgaaggttcttctgagtctca |
28597406 |
T |
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| Q |
210 |
aaggagaaagaaacgttaccaccgtcacactgctaatcagattcaaaggcttgaagcgtaagagtca |
276 |
Q |
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| T |
28597407 |
aaggagaaagaaacgttaccaccgtcacactgctaatcagattcaaaggcttgaagcgtaagagtca |
28597473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 9280850 - 9280908
Alignment:
| Q |
217 |
aagaaacgttaccaccgtcacactgctaatcagattcaaaggcttgaagcgtaagagtc |
275 |
Q |
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| T |
9280850 |
aagaaatgttgcaaccgtcacacttctaatcagatccaaaggcttgaagcgtaagagtc |
9280908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 9291821 - 9291879
Alignment:
| Q |
217 |
aagaaacgttaccaccgtcacactgctaatcagattcaaaggcttgaagcgtaagagtc |
275 |
Q |
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| T |
9291821 |
aagaaatgttgcaaccgtcacacttctaatcagatccaaaggcttgaagcgtaagagtc |
9291879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 9266075 - 9266145
Alignment:
| Q |
195 |
ttcttctgagtctcaaaggagaaagaaacgttaccaccgtcacactgctaatcagattcaaaggcttgaag |
265 |
Q |
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| T |
9266075 |
ttcttctgatactcataagaggaagaaacgttgaaaccgtcacactgctaatcagatccaaaggcttgaag |
9266145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 9233133 - 9233077
Alignment:
| Q |
219 |
gaaacgttaccaccgtcacactgctaatcagattcaaaggcttgaagcgtaagagtc |
275 |
Q |
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| T |
9233133 |
gaaacgttccaaacgtcacactcctcgtcagattcaaaggcttgaagcgtaagagtc |
9233077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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