View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4083_low_5 (Length: 372)
Name: NF4083_low_5
Description: NF4083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4083_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 291
Target Start/End: Original strand, 48064397 - 48064698
Alignment:
| Q |
7 |
atgcactcagattttttgtcggtatataaaa-actagtaataaagaagagataaggtagtggcattgcctgagtagtagcagaataatcataaggcatag |
105 |
Q |
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| T |
48064397 |
atgcactaagattttttgtcggtatataaaaaactagtaataaagaagagataaggaagtggcattgcctgagtagtagcagaataatcataaggcatag |
48064496 |
T |
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| Q |
106 |
aatgttgtagctctgatgaaaagtgaagaaggcaagatgtggtgaacaacaaaatgcatagctctgctgcaccgaccttcatattgtatgatttat---- |
201 |
Q |
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| T |
48064497 |
aatgttgtagctctgatgaaaagtgaagaaggcaagatgtggtgaacaacaaaatgcatagctctgctgcaccgaccttcatattgtatgatttatcaaa |
48064596 |
T |
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| Q |
202 |
------------caaacaaacaacccttcaacttatgcaccgtccattatatatccattttccgtcaaacattgcagttggtaagtaaccgttcattaac |
289 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48064597 |
caaacaaacaaacaaacaaacaacccttcaacttatgcaccgtccactatatatccattttccgtcaaacattgcagttggtaagtaaccgttcattaac |
48064696 |
T |
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| Q |
290 |
tc |
291 |
Q |
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|| |
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| T |
48064697 |
tc |
48064698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 48069813 - 48069864
Alignment:
| Q |
55 |
gataaggtagtggcattgcctgagtagtagcagaataatcataaggcataga |
106 |
Q |
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||||| |||||| |||||||| ||| |||||||||||||||||||||||||| |
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| T |
48069813 |
gataaagtagtgacattgcctcagtcgtagcagaataatcataaggcataga |
48069864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 48102308 - 48102359
Alignment:
| Q |
55 |
gataaggtagtggcattgcctgagtagtagcagaataatcataaggcataga |
106 |
Q |
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||||| |||||| |||||||| || |||||||||||||||||||||||||| |
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| T |
48102308 |
gataaagtagtgacattgcctcggtcgtagcagaataatcataaggcataga |
48102359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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