View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4083_low_8 (Length: 265)
Name: NF4083_low_8
Description: NF4083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4083_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 43144632 - 43144383
Alignment:
| Q |
1 |
aacaacctacctaaaaagaaaaattattgtgctcactagcagcagaataggccatttcttcaagtgagtatcccttactataaaatctaaatactgctgc |
100 |
Q |
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| T |
43144632 |
aacaacctacctaaaaagaaaaattattgtgctcaccagcagcagaataggccatttcttcaagtgagtatcccttactataaaatctaaatactgctgc |
43144533 |
T |
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| Q |
101 |
aagatgaatcattgccatcaagaatgatgctaccaatgcccatgacacatagcagtgaacaccagacaatgcacggttcatcatccaattaatgtttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43144532 |
aagatgaatcattgccatcaagaatgatgctaccaatgcccatgacacatagcagtgaacaccagacaatgcacggttcatcatccaattaatgtttgtt |
43144433 |
T |
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| Q |
201 |
gtatatgactccagagcgaatgtttgtttcctcaagtaattccagtatct |
250 |
Q |
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| T |
43144432 |
gtatatgactccagagcgaatgtttgtttcctcaagtaattccagtatct |
43144383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 43156993 - 43156744
Alignment:
| Q |
1 |
aacaacctacctaaaaagaaaaattattgtgctcactagcagcagaataggccatttcttcaagtgagtatcccttactataaaatctaaatactgctgc |
100 |
Q |
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||||||||||| |||||| |||| || ||||||||| ||||| || ||||||| ||||||||||||| ||||| |||||||||||||||||| ||||||| |
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| T |
43156993 |
aacaacctaccaaaaaaggaaaagtagtgtgctcaccagcagaagtataggccgtttcttcaagtgaatatccgttactataaaatctaaatgctgctgc |
43156894 |
T |
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| Q |
101 |
aagatgaatcattgccatcaagaatgatgctaccaatgcccatgacacatagcagtgaacaccagacaatgcacggttcatcatccaattaatgtttgtt |
200 |
Q |
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| T |
43156893 |
aagatgaatcgttgcaataaaaaatggtgctacgaatccccatgacaaatagcagtgaacaccaaacaatgcacggttcatcacccagttaatgtttgtt |
43156794 |
T |
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| Q |
201 |
gtatatgactccagagcgaatgtttgtttcctcaagtaattccagtatct |
250 |
Q |
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| T |
43156793 |
gtatatgactccaaaacaaatgtttgtttcctcaagtaattccaatatct |
43156744 |
T |
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