View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4084_high_5 (Length: 243)
Name: NF4084_high_5
Description: NF4084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4084_high_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 32523636 - 32523415
Alignment:
| Q |
19 |
gtggtagctgcgaacggttgggagaactcgttcttttgtgcactagctagggttttggattttagggcttttctcttattggtttatggtgtatcactaa |
118 |
Q |
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| T |
32523636 |
gtggtagctgcgaacggttgggagaactcactcttttgtgcactagctagggttttggattttagggcttttctcttattggtttatggtgtatcactaa |
32523537 |
T |
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| Q |
119 |
tccggtctcttgtaattttcttttgacataatctattgaatagaaattcaccgatgaataaatggaaaatttagagtttgaacttctttttccgcatact |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| |
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| T |
32523536 |
tccggtctcttgtaattttcttttgacataatctattgattagaaattcaccgatgaataaatggaaaattcagagtttgaa---cttttcccgcatact |
32523440 |
T |
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| Q |
219 |
aaaatttctatgccaattgagttgc |
243 |
Q |
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|||||||||||||||||||||||| |
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| T |
32523439 |
taaatttctatgccaattgagttgc |
32523415 |
T |
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