View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4084_high_6 (Length: 243)
Name: NF4084_high_6
Description: NF4084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4084_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 15913892 - 15913679
Alignment:
| Q |
9 |
agggggataaagtaattatcaacgctttaattaataatatattattattacaatttttgaattattagagaaaagaagaacaaaataaccgtagtactca |
108 |
Q |
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| T |
15913892 |
agggggataaagtaattatcaacgctttaattaataatatattattat---attttttgaattattagagaaaagaagaacaaaataaccgtagtactca |
15913796 |
T |
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| Q |
109 |
ttcgttacttgagctacaagctacttaatgtacttaggcttaaacttgttacttagcatgtaattagacttaatgacgtactctaccatttatctataaa |
208 |
Q |
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| T |
15913795 |
ttcgttacttgagctacaagctacttaatgtacttaagcttaatcttgttacttagcatgtaattagacttaatgacgtactttaccatttatctataaa |
15913696 |
T |
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| Q |
209 |
tactctatgtactctct |
225 |
Q |
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| T |
15913695 |
tactctatgtactctct |
15913679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 26464486 - 26464450
Alignment:
| Q |
139 |
tacttaggcttaaacttgttacttagcatgtaattag |
175 |
Q |
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| T |
26464486 |
tacttaggcttaatcatgttacttagcatgtaattag |
26464450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 26469172 - 26469136
Alignment:
| Q |
139 |
tacttaggcttaaacttgttacttagcatgtaattag |
175 |
Q |
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||||||||||||| | ||||||||||||||||||||| |
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| T |
26469172 |
tacttaggcttaatcatgttacttagcatgtaattag |
26469136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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