View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4084_high_8 (Length: 227)
Name: NF4084_high_8
Description: NF4084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4084_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 9168822 - 9168593
Alignment:
| Q |
1 |
ccttagatagactcaccatttcagataataatcagttaattctaaagtggaaaatcaattttaagaaccaatcatgtgcagagaaaaatcattcttatcc |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9168822 |
ccttagataaactcaccatttcagataataatcagttaattctaaagtggaaaatcaattttgagaaccaatcatgtgcagagaaaaatcattcttatcc |
9168723 |
T |
|
| Q |
101 |
tttctccaaactatggtagtagttctactacttcatcatc---------atcaagcatgtgatgcaactagtaatagtgataaccaaaaattctgtccac |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9168722 |
tttctccaaactatggtagtagttctactacttcatcatcatcatcatcatcaagcatgtgatgcaactagtaatagtgataaccaaaaattatgtccac |
9168623 |
T |
|
| Q |
192 |
cttcttcatgtggcaaaatgagaaacataa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9168622 |
cttcttcatgtggcaaaatgagaaacataa |
9168593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 69 - 221
Target Start/End: Complemental strand, 8936718 - 8936566
Alignment:
| Q |
69 |
caatcatgtgcagagaaaaatcattcttatcctttctccaaactatggtagtagttctactacttcatcatcatcaagcatgtgatgcaactagtaatag |
168 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| |||||| |||||||| ||| |||||||| |||||||||||| |||||||||||| || |||| |
|
|
| T |
8936718 |
caatcatgtgcaaagaaaaatcattcttattcttaatccaaattatggtaggagtgctactactgcatcatcatcaaacatgtgatgcaattacaaatac |
8936619 |
T |
|
| Q |
169 |
tgataaccaaaaattctgtccaccttcttcatgtggcaaaatgagaaacataa |
221 |
Q |
| |
|
| |||||||| ||||||||||||||||||||| |||||||| | |||||||| |
|
|
| T |
8936618 |
tagtaaccaaacattctgtccaccttcttcatgcggcaaaatcacaaacataa |
8936566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 69 - 220
Target Start/End: Complemental strand, 8960242 - 8960088
Alignment:
| Q |
69 |
caatcatgtgcagagaaaaatcattcttatcctttctccaaactatggtagtagttctactacttcatcatc---atcaagcatgtgatgcaactagtaa |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||| |||||||||||| |||||||| ||||||| ||||| |||||||||||| || || |
|
|
| T |
8960242 |
caatcatgtgcagagaaaaatcattcttattcttaatccaaattatggtagtagtgctactactgcatcatcatcatcaaacatgtgatgcaattacaaa |
8960143 |
T |
|
| Q |
166 |
tagtgataaccaaaaattctgtccaccttcttcatgtggcaaaatgagaaacata |
220 |
Q |
| |
|
|| | |||||||| || |||||||||||||||||||||||||| |||||||| |
|
|
| T |
8960142 |
tactagtaaccaaacatattgtccaccttcttcatgtggcaaaattggaaacata |
8960088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 210
Target Start/End: Complemental strand, 8925083 - 8924936
Alignment:
| Q |
69 |
caatcatgtgcagagaaaaatcattcttatcctttctccaaactatggtagtagttctactacttcatcatc------atcaagcatgtgatgcaactag |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||| |||||||||||| |||||||||||||||| ||||| |||||||||||| || |
|
|
| T |
8925083 |
caatcatgtgcagagaaaaatcattcttattcttaatccaaattatggtagtagtgctactacttcatcatcatcatcatcaaacatgtgatgcaattac |
8924984 |
T |
|
| Q |
163 |
taatagtgataaccaaaaattctgtccaccttcttcatgtggcaaaat |
210 |
Q |
| |
|
|||| | |||||||| || |||||||||||||||||||||||||| |
|
|
| T |
8924983 |
aaatactagtaaccaaacatattgtccaccttcttcatgtggcaaaat |
8924936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 9359527 - 9359440
Alignment:
| Q |
133 |
tcatcatcatcaagcatgtgatgcaactagtaatagtgataaccaaaaattctgtccaccttcttcatgtggcaaaatgagaaacata |
220 |
Q |
| |
|
||||||||||||| |||||||||||| || ||||| ||||||||| || ||||||||||||||||| |||||||| | ||||||| |
|
|
| T |
9359527 |
tcatcatcatcaaacatgtgatgcaattactaatacaaataaccaaacatattgtccaccttcttcatgcggcaaaatcacaaacata |
9359440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 8946209 - 8946119
Alignment:
| Q |
69 |
caatcatgtgcagagaaaaatcattcttatcctttctccaaactatggtagtagttctactacttcatcatcatcaagcatgtgatgcaac |
159 |
Q |
| |
|
||||||||||||||| ||| |||||||||| || ||||||| |||||| || | | | ||||| |||||||||||| ||||||||||||| |
|
|
| T |
8946209 |
caatcatgtgcagagcaaactcattcttatgtttcctccaaattatggttgttgctatgctactgcatcatcatcaaacatgtgatgcaac |
8946119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 9335789 - 9335703
Alignment:
| Q |
133 |
tcatcatcatcaagcatgtgatgcaactagtaatagtgataaccaaaaattctgtccaccttcttcatgtggcaaaatgagaaacat |
219 |
Q |
| |
|
||||||||||||| |||||||||||| || ||||| ||||| ||| || ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
9335789 |
tcatcatcatcaaacatgtgatgcaattactaatacaaataacaaaacatattgtccaccttcttcatgcggcaaaatcagcaacat |
9335703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 9475170 - 9475258
Alignment:
| Q |
133 |
tcatcatcatcaagcatgtgatgcaactagtaatagtgataaccaaaaattctgtccaccttcttcatgtggcaaaatgagaaacataa |
221 |
Q |
| |
|
||||||||||||| ||||||| || || | || || | ||||||||| | |||||||||||||||||||||||| | | |||||||| |
|
|
| T |
9475170 |
tcatcatcatcaaacatgtgaggctaccaatagtaataataaccaaacaaattgtccaccttcttcatgtggcaaactcacaaacataa |
9475258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University