View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4084_low_3 (Length: 278)
Name: NF4084_low_3
Description: NF4084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4084_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 24736048 - 24735794
Alignment:
| Q |
18 |
gtatcattaccccgctcttcgaaatcaaccttgtcctcaaggttggaagtaagacaaccctccaaaagcttaatgtcgtgtaccaaaatgattccattgc |
117 |
Q |
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| T |
24736048 |
gtatcattaccccgctcttcgaaatcaaccttgtcctcaaggttggaagtaagacaaccctccaaaagcttaatgtcgtgtaccaaaatgattccattgc |
24735949 |
T |
|
| Q |
118 |
aatctgcttcttccggtgaacataaaagtgttgattttgttctgcaaatattatctcaacaatatcccaaaaccatgct---atcaaccattccatccca |
214 |
Q |
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| T |
24735948 |
aatctgcttcttccggtgaacataaaagtgttgattttgttctgcaaatattatctcaacaatatcccaaaaccatgctatgatcaaccattccatccca |
24735849 |
T |
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| Q |
215 |
tcatagattgtgtactcaatatgtgcccttgcatgttttgctaattcaccctttg |
269 |
Q |
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| T |
24735848 |
tcatagattgtgtactcaatatgtgcccttgcatgttttgctaattcaccctttg |
24735794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 30456186 - 30455991
Alignment:
| Q |
18 |
gtatcattacccc-gctcttcgaaatcaaccttgtcctcaaggttggaagtaagacaaccctccaaaagcttaatgtcgtgtaccaaaatga-ttccatt |
115 |
Q |
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| T |
30456186 |
gtatcattacctcagctcttcgaaatcaaccttgtcctcaaggttgtaaaccagacaagcctccacaagcttaatgccatgtaccaaaatgactcccaat |
30456087 |
T |
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| Q |
116 |
gcaatctgcttcttccggtgaacataaaagtgttgattttgttctgcaaatattatctcaacaatatcccaaaaccatgctatcaaccattccatc |
211 |
Q |
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| T |
30456086 |
gcaatctgtttctgccagtgaacaaacaaatgttgattttgttccacagatactacctccacaatattccaaaaccaagctatcaaccatttcatc |
30455991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 33329315 - 33329166
Alignment:
| Q |
96 |
tgtaccaaaatgattc-cattgcaatctgcttcttccggtgaacataaaagtgttgattttgttct----gcaaatattatctcaacaatatcccaaaac |
190 |
Q |
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||||||||||||||| || || |||||||| |||||||||| || |||| |||||||||| |||| ||| | | || |||||||||| |||||||| |
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| T |
33329315 |
tgtaccaaaatgattttcaatgtaatctgctgcttccggtgaccaaaaaaatgttgatttttttctttctgcatacactacctcaacaataacccaaaac |
33329216 |
T |
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| Q |
191 |
catgctatcaaccattccatcccatcatagattgtgtactcaatatgtgc |
240 |
Q |
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| T |
33329215 |
caacctatcaactattccatcccatcatagttagtatactcagtatgtgc |
33329166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 13587424 - 13587464
Alignment:
| Q |
22 |
cattaccccgctcttcgaaatcaaccttgtcctcaaggttg |
62 |
Q |
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| T |
13587424 |
cattaccaccctctttgaaatcaaccttgtcctcaaggttg |
13587464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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