View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4085_high_10 (Length: 278)

Name: NF4085_high_10
Description: NF4085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4085_high_10
NF4085_high_10
[»] chr3 (7 HSPs)
chr3 (124-275)||(10515660-10515811)
chr3 (209-275)||(9997196-9997262)
chr3 (209-275)||(10218291-10218357)
chr3 (228-275)||(10018426-10018473)
chr3 (228-275)||(10122966-10123013)
chr3 (209-275)||(10228007-10228074)
chr3 (228-275)||(10255922-10255969)
[»] chr5 (5 HSPs)
chr5 (209-275)||(26797762-26797828)
chr5 (209-275)||(26801384-26801451)
chr5 (209-275)||(26808934-26809001)
chr5 (209-275)||(26816324-26816391)
chr5 (209-275)||(26823961-26824028)
[»] scaffold0083 (1 HSPs)
scaffold0083 (217-275)||(51738-51796)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 124 - 275
Target Start/End: Original strand, 10515660 - 10515811
Alignment:
Q  124 cttgagttcataagcacaagttagcaaccgttgataataatggtcgataaccaaagaagcattattattactcttactattcattcacatgctaagtcgt 223  Q
    ||||||| |||||||||| |||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  10515660 cttgagtccataagcacaggttagcaaccgttgataataatggtccataaacgaagaagcattattattactcttactattcattcacatgctaagtcgt 10515759  T
Q  224 ctttagtctaaactccttaattgccgttactactatatcattgaatcttcat 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10515760 ctttagtctaaactccttaattgccgttactactatatcattgaatcttcat 10515811  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 9997196 - 9997262
Alignment:
Q  209 cacatgctaagtcgtctttagtctaaactccttaattgccgttactactatatcattgaatcttcat 275  Q
    |||| |||||||| |||| ||||| ||||||||||||||  ||||||||||||| ||||||||||||    
T  9997196 cacaagctaagtcttcttgagtcttaactccttaattgcaattactactatatccttgaatcttcat 9997262  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 10218291 - 10218357
Alignment:
Q  209 cacatgctaagtcgtctttagtctaaactccttaattgccgttactactatatcattgaatcttcat 275  Q
    |||| |||||||| || | ||||| ||||||||||||||  ||||||||||||| ||||||||||||    
T  10218291 cacaagctaagtcttcgtgagtcttaactccttaattgcaattactactatatccttgaatcttcat 10218357  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 10018426 - 10018473
Alignment:
Q  228 agtctaaactccttaattgccgttactactatatcattgaatcttcat 275  Q
    ||||| ||||||||||||||  ||||||||||||| ||||||||||||    
T  10018426 agtcttaactccttaattgcaattactactatatccttgaatcttcat 10018473  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 10122966 - 10123013
Alignment:
Q  228 agtctaaactccttaattgccgttactactatatcattgaatcttcat 275  Q
    ||||| ||||||||||||||  ||||||||||||| ||||||||||||    
T  10122966 agtcttaactccttaattgcaattactactatatccttgaatcttcat 10123013  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 10228007 - 10228074
Alignment:
Q  209 cacatgctaagtcgtctttagtctaaactccttaattgc-cgttactactatatcattgaatcttcat 275  Q
    |||| |||||||| |||| ||||| ||||||||||||||   ||||||||||||| ||||||||||||    
T  10228007 cacaagctaagtcttcttgagtcttaactccttaattgcaaattactactatatccttgaatcttcat 10228074  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 10255922 - 10255969
Alignment:
Q  228 agtctaaactccttaattgccgttactactatatcattgaatcttcat 275  Q
    ||||| ||||||||||||||  ||||||||||||| ||||||||||||    
T  10255922 agtcttaactccttaattgcaattactactatatccttgaatcttcat 10255969  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 26797762 - 26797828
Alignment:
Q  209 cacatgctaagtcgtctttagtctaaactccttaattgccgttactactatatcattgaatcttcat 275  Q
    |||| |||||||| || | ||||| ||||||||||||||  ||||||||||||| ||||||||||||    
T  26797762 cacaagctaagtcttcgtgagtcttaactccttaattgcaattactactatatccttgaatcttcat 26797828  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 26801384 - 26801451
Alignment:
Q  209 cacatgctaagtcgtctttagtctaaactccttaattgc-cgttactactatatcattgaatcttcat 275  Q
    |||| |||||||| |||| ||||| ||||||||||||||   ||||||||||||| ||||||||||||    
T  26801384 cacaagctaagtcttcttgagtcttaactccttaattgcaaattactactatatccttgaatcttcat 26801451  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 26808934 - 26809001
Alignment:
Q  209 cacatgctaagtcgtctttagtctaaactccttaattgc-cgttactactatatcattgaatcttcat 275  Q
    |||| |||||||| |||| ||||| ||||||||||||||   ||||||||||||| ||||||||||||    
T  26808934 cacaagctaagtcttcttgagtcttaactccttaattgcaaattactactatatccttgaatcttcat 26809001  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 26816324 - 26816391
Alignment:
Q  209 cacatgctaagtcgtctttagtctaaactccttaattgc-cgttactactatatcattgaatcttcat 275  Q
    |||| |||||||| |||| ||||| ||||||||||||||   ||||||||||||| ||||||||||||    
T  26816324 cacaagctaagtcttcttgagtcttaactccttaattgcaaattactactatatccttgaatcttcat 26816391  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 26823961 - 26824028
Alignment:
Q  209 cacatgctaagtcgtctttagtctaaactccttaattgc-cgttactactatatcattgaatcttcat 275  Q
    |||| |||||||| |||| ||||| ||||||||||||||   ||||||||||||| ||||||||||||    
T  26823961 cacaagctaagtcttcttgagtcttaactccttaattgcaaattactactatatccttgaatcttcat 26824028  T

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Target: scaffold0083 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 275
Target Start/End: Complemental strand, 51796 - 51738
Alignment:
Q  217 aagtcgtctttagtctaaactccttaattgccgttactactatatcattgaatcttcat 275  Q
    ||||| |||| ||||| ||||||||||||||  ||||| ||||||| ||||||||||||    
T  51796 aagtcttcttgagtcttaactccttaattgcaattacttctatatccttgaatcttcat 51738  T

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