View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4085_high_5 (Length: 401)

Name: NF4085_high_5
Description: NF4085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4085_high_5
NF4085_high_5
[»] chr6 (6 HSPs)
chr6 (11-382)||(2386425-2386795)
chr6 (185-233)||(24333044-24333092)
chr6 (191-232)||(3525236-3525277)
chr6 (189-230)||(4308887-4308928)
chr6 (193-230)||(31776191-31776228)
chr6 (199-231)||(30536883-30536915)
[»] chr2 (7 HSPs)
chr2 (189-231)||(37276854-37276896)
chr2 (189-230)||(37419586-37419627)
chr2 (189-231)||(1830149-1830191)
chr2 (185-231)||(15370241-15370287)
chr2 (192-229)||(40059381-40059418)
chr2 (192-229)||(40085281-40085318)
chr2 (192-228)||(43985322-43985358)
[»] chr4 (11 HSPs)
chr4 (199-232)||(28615454-28615487)
chr4 (189-232)||(679401-679444)
chr4 (185-232)||(41433481-41433528)
chr4 (187-230)||(53034718-53034761)
chr4 (189-231)||(22662169-22662211)
chr4 (189-231)||(22666648-22666690)
chr4 (191-232)||(27043747-27043788)
chr4 (197-230)||(52428782-52428815)
chr4 (200-232)||(7367971-7368003)
chr4 (191-231)||(25571371-25571411)
chr4 (182-230)||(54575522-54575570)
[»] chr3 (5 HSPs)
chr3 (191-232)||(25447162-25447203)
chr3 (191-232)||(36507009-36507050)
chr3 (190-232)||(47903997-47904039)
chr3 (191-228)||(26911703-26911740)
chr3 (191-227)||(33405114-33405150)
[»] chr8 (3 HSPs)
chr8 (185-228)||(39551130-39551173)
chr8 (199-232)||(10727464-10727497)
chr8 (191-231)||(38602439-38602479)
[»] chr7 (5 HSPs)
chr7 (185-232)||(28691753-28691800)
chr7 (185-232)||(41040271-41040318)
chr7 (191-228)||(9210933-9210970)
chr7 (191-232)||(37064385-37064426)
chr7 (191-231)||(44822070-44822110)
[»] chr5 (6 HSPs)
chr5 (181-228)||(18286893-18286940)
chr5 (189-231)||(3280654-3280696)
chr5 (191-232)||(32197845-32197886)
chr5 (200-232)||(10638452-10638484)
chr5 (199-231)||(32010065-32010097)
chr5 (199-231)||(40335791-40335823)
[»] chr1 (4 HSPs)
chr1 (185-224)||(4200340-4200379)
chr1 (181-231)||(37241739-37241788)
chr1 (189-230)||(6292602-6292643)
chr1 (199-232)||(30013996-30014029)


Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 382
Target Start/End: Complemental strand, 2386795 - 2386425
Alignment:
Q  11 atggacatcatccacgacacagacactgacacaacgacaatgctactaatttgagaaacacacaattcatataagatgttatcataagctagtccttgag 110  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386795 atggacatcagacacgacacagacactgacacaacgacaatgctactaatttgagaaacacacaattcatataagatgttatcataagctagtccttgag 2386696  T
Q  111 ggcttatgaaagtaagctgaaaactacacatggatattttttaagctgtttctgtatattctcaaaaaggctcgcaaatgcttatatcagtagataaact 210  Q
    |||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||  | || |||||||||||    
T  2386695 ggcttatgaaagtaagctgaaaactacgaatggacattttttaagctgtttctgtatattctcaaaaaggctcgcaaatgctgtt-tctgtagataaact 2386597  T
Q  211 taaataagtcaatccaaacagaaagttactgttaatttgaatattcaactttttcttcactagttattgacattttttcttgtgttttcttcctataggg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386596 taaataagtcaatccaaacagaaagttactgttaatttgaatattcaactttttcttcactagttattgacattttttcttgtgttttcttcctataggg 2386497  T
Q  311 acttgcagcattgacaacaacagccctagcaagatcatggcatcacaaaaacagatcaatgtcatcttcatt 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386496 acttgcagcattgacaacaacagccctagcaagatcatggcatcacaaaaacagatcaatgtcatcttcatt 2386425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 24333044 - 24333092
Alignment:
Q  185 caaatgcttatatcagtagataaacttaaataagtcaatccaaacagaa 233  Q
    ||||||||||| |||||| ||||||| ||||| ||||||||||||||||    
T  24333044 caaatgcttatgtcagtacataaactgaaatatgtcaatccaaacagaa 24333092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 3525236 - 3525277
Alignment:
Q  191 cttatatcagtagataaacttaaataagtcaatccaaacaga 232  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||    
T  3525236 cttatgtcactagataaacttaaattagtcaatccaaacaga 3525277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 4308887 - 4308928
Alignment:
Q  189 tgcttatatcagtagataaacttaaataagtcaatccaaaca 230  Q
    ||||||| |||||||||||||| ||||||| |||||||||||    
T  4308887 tgcttatgtcagtagataaactcaaataagccaatccaaaca 4308928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 31776228 - 31776191
Alignment:
Q  193 tatatcagtagataaacttaaataagtcaatccaaaca 230  Q
    ||||||||||||||| || |||||||||||||||||||    
T  31776228 tatatcagtagataagctcaaataagtcaatccaaaca 31776191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 30536915 - 30536883
Alignment:
Q  199 agtagataaacttaaataagtcaatccaaacag 231  Q
    |||||||||||| ||||||||||||||||||||    
T  30536915 agtagataaactcaaataagtcaatccaaacag 30536883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 37276854 - 37276896
Alignment:
Q  189 tgcttatatcagtagataaacttaaataagtcaatccaaacag 231  Q
    ||||||||| |||||||||||||||||||||| ||||||||||    
T  37276854 tgcttatattagtagataaacttaaataagtcgatccaaacag 37276896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 37419627 - 37419586
Alignment:
Q  189 tgcttatatcagtagataaacttaaataagtcaatccaaaca 230  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  37419627 tgcttatataagtagataaactcaaataagtcaatccaaaca 37419586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 1830149 - 1830191
Alignment:
Q  189 tgcttatatcagtagataaacttaaataagtcaatccaaacag 231  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||    
T  1830149 tgcttatgtcagtaaataaactcaaataagtcaatccaaacag 1830191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 15370287 - 15370241
Alignment:
Q  185 caaatgcttatatcagtagataaacttaaataagtcaatccaaacag 231  Q
    |||||||||||  |||||||||| || ||||||||||||||||||||    
T  15370287 caaatgcttatgccagtagataagctcaaataagtcaatccaaacag 15370241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 40059418 - 40059381
Alignment:
Q  192 ttatatcagtagataaacttaaataagtcaatccaaac 229  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  40059418 ttatgtcagtagataaactcaaataagtcaatccaaac 40059381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 40085318 - 40085281
Alignment:
Q  192 ttatatcagtagataaacttaaataagtcaatccaaac 229  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  40085318 ttatgtcagtagataaactcaaataagtcaatccaaac 40085281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 43985322 - 43985358
Alignment:
Q  192 ttatatcagtagataaacttaaataagtcaatccaaa 228  Q
    |||| |||||||||||||||||||||||| |||||||    
T  43985322 ttatgtcagtagataaacttaaataagtcgatccaaa 43985358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 28615454 - 28615487
Alignment:
Q  199 agtagataaacttaaataagtcaatccaaacaga 232  Q
    ||||||||||||||||||||||||||||||||||    
T  28615454 agtagataaacttaaataagtcaatccaaacaga 28615487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 679401 - 679444
Alignment:
Q  189 tgcttatatcagtagataaacttaaataagtcaatccaaacaga 232  Q
    |||||||| ||||||||||||| |||||||||||| ||||||||    
T  679401 tgcttataccagtagataaactcaaataagtcaattcaaacaga 679444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 41433481 - 41433528
Alignment:
Q  185 caaatgcttatatcagtagataaacttaaataagtcaatccaaacaga 232  Q
    ||||||||||| |||| ||||||||| |||||||||||| ||||||||    
T  41433481 caaatgcttatgtcaggagataaactcaaataagtcaattcaaacaga 41433528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 53034761 - 53034718
Alignment:
Q  187 aatgcttatatcagtagataaacttaaataagtcaatccaaaca 230  Q
    ||||||||||||||||||||| || ||||||||||| |||||||    
T  53034761 aatgcttatatcagtagataagctcaaataagtcaaaccaaaca 53034718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 22662211 - 22662169
Alignment:
Q  189 tgcttatatcagtagataaacttaaataagtcaatccaaacag 231  Q
    ||||||| | |||||||||||| ||||||||||||||||||||    
T  22662211 tgcttatgttagtagataaactcaaataagtcaatccaaacag 22662169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 22666690 - 22666648
Alignment:
Q  189 tgcttatatcagtagataaacttaaataagtcaatccaaacag 231  Q
    ||||||| | |||||||||||| ||||||||||||||||||||    
T  22666690 tgcttatgttagtagataaactcaaataagtcaatccaaacag 22666648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 27043788 - 27043747
Alignment:
Q  191 cttatatcagtagataaacttaaataagtcaatccaaacaga 232  Q
    ||||| ||||||||||| || |||||||||||||||||||||    
T  27043788 cttatgtcagtagataagctcaaataagtcaatccaaacaga 27043747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 52428782 - 52428815
Alignment:
Q  197 tcagtagataaacttaaataagtcaatccaaaca 230  Q
    |||||||||||||| |||||||||||||||||||    
T  52428782 tcagtagataaactcaaataagtcaatccaaaca 52428815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 7368003 - 7367971
Alignment:
Q  200 gtagataaacttaaataagtcaatccaaacaga 232  Q
    ||||||||||| |||||||||||||||||||||    
T  7368003 gtagataaactcaaataagtcaatccaaacaga 7367971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 25571371 - 25571411
Alignment:
Q  191 cttatatcagtagataaacttaaataagtcaatccaaacag 231  Q
    ||||| |||||||||||||| ||||||| ||||||||||||    
T  25571371 cttatgtcagtagataaactcaaataagccaatccaaacag 25571411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 54575570 - 54575522
Alignment:
Q  182 tcgcaaatgcttatatcagtagataaacttaaataagtcaatccaaaca 230  Q
    |||||||||||||| ||  || ||||||| |||||||||||||||||||    
T  54575570 tcgcaaatgcttatgtctataaataaactcaaataagtcaatccaaaca 54575522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 25447203 - 25447162
Alignment:
Q  191 cttatatcagtagataaacttaaataagtcaatccaaacaga 232  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  25447203 cttatgtcagtagataaactcaaataagtcaatccaaacaga 25447162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 36507050 - 36507009
Alignment:
Q  191 cttatatcagtagataaacttaaataagtcaatccaaacaga 232  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  36507050 cttatatcagtagataaactcaaataagccaatccaaacaga 36507009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 47904039 - 47903997
Alignment:
Q  190 gcttatatcagtagataaacttaaataagtcaatccaaacaga 232  Q
    |||||||||||  |||||||| |||||||||||||||||||||    
T  47904039 gcttatatcagaggataaactcaaataagtcaatccaaacaga 47903997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 26911703 - 26911740
Alignment:
Q  191 cttatatcagtagataaacttaaataagtcaatccaaa 228  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  26911703 cttatgtcagtagataaactcaaataagtcaatccaaa 26911740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 33405150 - 33405114
Alignment:
Q  191 cttatatcagtagataaacttaaataagtcaatccaa 227  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  33405150 cttatgtcagtagataaactcaaataagtcaatccaa 33405114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 39551173 - 39551130
Alignment:
Q  185 caaatgcttatatcagtagataaacttaaataagtcaatccaaa 228  Q
    |||||||||||||| |||||||| || |||||||||||||||||    
T  39551173 caaatgcttatatccgtagataatctcaaataagtcaatccaaa 39551130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 10727464 - 10727497
Alignment:
Q  199 agtagataaacttaaataagtcaatccaaacaga 232  Q
    |||||||||||| |||||||||||||||||||||    
T  10727464 agtagataaactcaaataagtcaatccaaacaga 10727497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 38602439 - 38602479
Alignment:
Q  191 cttatatcagtagataaacttaaataagtcaatccaaacag 231  Q
    ||||| ||||||||||| || ||||||||||||||||||||    
T  38602439 cttatgtcagtagataagctcaaataagtcaatccaaacag 38602479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 28691800 - 28691753
Alignment:
Q  185 caaatgcttatatcagtagataaacttaaataagtcaatccaaacaga 232  Q
    ||||||||||| | || ||||||||| |||||||||||||||||||||    
T  28691800 caaatgcttatgttagcagataaactcaaataagtcaatccaaacaga 28691753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 41040271 - 41040318
Alignment:
Q  185 caaatgcttatatcagtagataaacttaaataagtcaatccaaacaga 232  Q
    ||||| |||||||||||||||||||| |||||| ||||| ||||||||    
T  41040271 caaatacttatatcagtagataaactcaaataaatcaattcaaacaga 41040318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 9210933 - 9210970
Alignment:
Q  191 cttatatcagtagataaacttaaataagtcaatccaaa 228  Q
    ||||||||||||||||| || |||||||||||||||||    
T  9210933 cttatatcagtagataagctcaaataagtcaatccaaa 9210970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 37064426 - 37064385
Alignment:
Q  191 cttatatcagtagataaacttaaataagtcaatccaaacaga 232  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  37064426 cttatatcagtagataagatcaaataagtcaatccaaacaga 37064385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 44822070 - 44822110
Alignment:
Q  191 cttatatcagtagataaacttaaataagtcaatccaaacag 231  Q
    ||||| |||| ||||||||| ||||||||||||||||||||    
T  44822070 cttatgtcagcagataaactcaaataagtcaatccaaacag 44822110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 18286893 - 18286940
Alignment:
Q  181 ctcgcaaatgcttatatcagtagataaacttaaataagtcaatccaaa 228  Q
    ||||||||||||||||| ||||||||||||  ||||| ||||||||||    
T  18286893 ctcgcaaatgcttatattagtagataaactcgaataattcaatccaaa 18286940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 3280696 - 3280654
Alignment:
Q  189 tgcttatatcagtagataaacttaaataagtcaatccaaacag 231  Q
    |||||| ||||||||||||  ||||||||||||||||||||||    
T  3280696 tgcttaaatcagtagataagtttaaataagtcaatccaaacag 3280654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 32197845 - 32197886
Alignment:
Q  191 cttatatcagtagataaacttaaataagtcaatccaaacaga 232  Q
    ||||| |||||||||||||| ||| |||||||||||||||||    
T  32197845 cttatgtcagtagataaactcaaaaaagtcaatccaaacaga 32197886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 10638484 - 10638452
Alignment:
Q  200 gtagataaacttaaataagtcaatccaaacaga 232  Q
    |||||||| ||||||||||||||||||||||||    
T  10638484 gtagataatcttaaataagtcaatccaaacaga 10638452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 32010065 - 32010097
Alignment:
Q  199 agtagataaacttaaataagtcaatccaaacag 231  Q
    |||||||||||| ||||||||||||||||||||    
T  32010065 agtagataaactcaaataagtcaatccaaacag 32010097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 40335823 - 40335791
Alignment:
Q  199 agtagataaacttaaataagtcaatccaaacag 231  Q
    |||||||||||| ||||||||||||||||||||    
T  40335823 agtagataaactcaaataagtcaatccaaacag 40335791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 4200340 - 4200379
Alignment:
Q  185 caaatgcttatatcagtagataaacttaaataagtcaatc 224  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  4200340 caaatgcttatatcagtatataaactaaaataagtcaatc 4200379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 37241788 - 37241739
Alignment:
Q  181 ctcgcaaatgcttatatcagtagataaacttaaataagtcaatccaaacag 231  Q
    ||||||| |||||||  |||||||||| |||||||||||||||||||||||    
T  37241788 ctcgcaagtgcttatg-cagtagataagcttaaataagtcaatccaaacag 37241739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 6292602 - 6292643
Alignment:
Q  189 tgcttatatcagtagataaacttaaataagtcaatccaaaca 230  Q
    ||||||| ||||||||||| || |||||||||||||||||||    
T  6292602 tgcttatgtcagtagataagctcaaataagtcaatccaaaca 6292643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 30014029 - 30013996
Alignment:
Q  199 agtagataaacttaaataagtcaatccaaacaga 232  Q
    |||||||||||| |||||||||||||||||||||    
T  30014029 agtagataaactcaaataagtcaatccaaacaga 30013996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University