View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4085_high_8 (Length: 318)
Name: NF4085_high_8
Description: NF4085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4085_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 6534060 - 6533738
Alignment:
| Q |
1 |
catgtcaaacttaacttccatat-ttaaacacttttatacctaaccacaaagatgtgattacttttaaagtttgtcgatgctataatttaatgttaaaac |
99 |
Q |
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||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
6534060 |
catgtcaaacttaacttccatatcttaaacacttttacacctgaccacaaagatgtgattacttttaaaggttgttgatgctataatttaatgttaaaac |
6533961 |
T |
|
| Q |
100 |
atttttgctactcaatcattaaacacaactaactgtgaatcgtttcgatcattttctccttcttgtgttgcacaaattctcaatacagatatagtataca |
199 |
Q |
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|||||||| |||||||||||||||||||| | |||| ||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
6533960 |
atttttgccactcaatcattaaacacaacaagctgtaaatcgtttccatcattttctccttcttgtgttgcacagattctcaatacaagtatagtataca |
6533861 |
T |
|
| Q |
200 |
gatagaaggcctaatattatcgaaact-------tacaatttacctccttcctctaaattttgtattcctaactcaacaaacagttgaactacctaaatt |
292 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6533860 |
gatagaaggcctaatattatcgaaactttattactacaatttacctccttcctttaaattttgtattcctaactcaacaaacagttgaactacctaaatt |
6533761 |
T |
|
| Q |
293 |
actcttaattcaaataaatggga |
315 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
6533760 |
actcttaattcaaataaatggga |
6533738 |
T |
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