View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4085_low_1 (Length: 646)

Name: NF4085_low_1
Description: NF4085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4085_low_1
NF4085_low_1
[»] chr5 (14 HSPs)
chr5 (1-416)||(6534216-6534631)
chr5 (407-644)||(6534650-6534886)
chr5 (1-256)||(13166563-13166818)
chr5 (16-256)||(27336892-27337132)
chr5 (1-254)||(15291676-15291932)
chr5 (17-256)||(38446365-38446604)
chr5 (16-256)||(35310647-35310887)
chr5 (16-250)||(26212251-26212484)
chr5 (16-256)||(433491-433731)
chr5 (60-249)||(3113877-3114065)
chr5 (99-256)||(32269550-32269705)
chr5 (166-250)||(43129738-43129822)
chr5 (189-256)||(33691896-33691963)
chr5 (189-256)||(34335536-34335603)
[»] chr7 (11 HSPs)
chr7 (16-254)||(28516955-28517193)
chr7 (1-256)||(4501457-4501712)
chr7 (18-209)||(32585393-32585584)
chr7 (18-267)||(10905293-10905540)
chr7 (16-253)||(47679327-47679563)
chr7 (99-256)||(45613593-45613750)
chr7 (98-255)||(3676840-3676997)
chr7 (16-129)||(24527916-24528029)
chr7 (18-255)||(19277493-19277729)
chr7 (189-253)||(43857076-43857140)
chr7 (186-256)||(38839526-38839595)
[»] chr6 (15 HSPs)
chr6 (19-256)||(34304695-34304933)
chr6 (1-256)||(357370-357625)
chr6 (16-256)||(32115888-32116128)
chr6 (16-255)||(45337-45576)
chr6 (99-256)||(12401530-12401687)
chr6 (51-145)||(14538642-14538736)
chr6 (60-285)||(20693312-20693537)
chr6 (15-256)||(29337753-29337991)
chr6 (16-256)||(4206264-4206504)
chr6 (188-256)||(33220551-33220619)
chr6 (101-140)||(22882544-22882583)
chr6 (101-140)||(22900479-22900518)
chr6 (219-256)||(28543574-28543611)
chr6 (228-256)||(959779-959807)
chr6 (97-129)||(7200322-7200354)
[»] chr4 (18 HSPs)
chr4 (15-256)||(3330149-3330390)
chr4 (31-256)||(50000608-50000833)
chr4 (100-256)||(26521687-26521843)
chr4 (152-256)||(25706708-25706812)
chr4 (51-256)||(56461816-56462015)
chr4 (51-267)||(132575-132789)
chr4 (1-256)||(12918019-12918280)
chr4 (16-256)||(16957735-16957975)
chr4 (16-231)||(34952401-34952610)
chr4 (165-256)||(6865630-6865721)
chr4 (117-255)||(30940508-30940646)
chr4 (105-256)||(31847286-31847434)
chr4 (219-267)||(53098594-53098642)
chr4 (109-256)||(12053610-12053756)
chr4 (189-256)||(18534599-18534666)
chr4 (99-256)||(25504492-25504650)
chr4 (16-126)||(53170828-53170937)
chr4 (216-256)||(53619785-53619825)
[»] chr2 (17 HSPs)
chr2 (1-256)||(28225199-28225454)
chr2 (16-255)||(20142408-20142647)
chr2 (16-256)||(17344837-17345077)
chr2 (16-255)||(4412734-4412973)
chr2 (1-255)||(41867561-41867815)
chr2 (101-256)||(27502560-27502715)
chr2 (105-256)||(9675043-9675194)
chr2 (1-209)||(44686664-44686871)
chr2 (192-256)||(23484782-23484846)
chr2 (16-159)||(9685083-9685226)
chr2 (1-153)||(33612194-33612346)
chr2 (185-256)||(19161620-19161691)
chr2 (99-256)||(18744705-18744862)
chr2 (166-252)||(13146952-13147038)
chr2 (117-175)||(16351608-16351666)
chr2 (99-174)||(5679558-5679633)
chr2 (190-256)||(10579621-10579687)
[»] chr8 (9 HSPs)
chr8 (16-256)||(39434866-39435106)
chr8 (16-256)||(500426-500666)
chr8 (16-256)||(24125227-24125467)
chr8 (152-256)||(25021618-25021722)
chr8 (136-256)||(35739775-35739895)
chr8 (51-252)||(42921830-42922031)
chr8 (60-250)||(37517299-37517484)
chr8 (222-256)||(38815483-38815517)
chr8 (17-254)||(10189744-10189981)
[»] chr1 (12 HSPs)
chr1 (16-256)||(34644765-34645005)
chr1 (16-207)||(22347125-22347316)
chr1 (51-256)||(4861692-4861897)
chr1 (51-256)||(37931922-37932126)
chr1 (39-255)||(28040818-28041034)
chr1 (16-208)||(7794583-7794776)
chr1 (11-262)||(38731773-38732027)
chr1 (51-256)||(29169497-29169702)
chr1 (192-267)||(35387161-35387236)
chr1 (192-254)||(43831441-43831503)
chr1 (187-256)||(25375672-25375741)
chr1 (51-127)||(19035775-19035851)
[»] chr3 (11 HSPs)
chr3 (22-267)||(29861985-29862230)
chr3 (16-256)||(53785908-53786147)
chr3 (99-256)||(39582980-39583137)
chr3 (36-255)||(52741199-52741418)
chr3 (62-206)||(7901101-7901243)
chr3 (32-171)||(35236412-35236551)
chr3 (16-256)||(49018162-49018402)
chr3 (16-147)||(43123452-43123583)
chr3 (16-251)||(52411570-52411805)
chr3 (219-254)||(37992533-37992568)
chr3 (111-209)||(38146306-38146404)
[»] scaffold1768 (1 HSPs)
scaffold1768 (219-256)||(55-92)
[»] scaffold0186 (1 HSPs)
scaffold0186 (99-256)||(19920-20077)
[»] scaffold0148 (1 HSPs)
scaffold0148 (189-253)||(33453-33517)
[»] scaffold0031 (1 HSPs)
scaffold0031 (109-197)||(49672-49760)


Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 6534216 - 6534631
Alignment:
Q  1 tgatgagatgtgttatgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaac 100  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||| ||||    
T  6534216 tgatgaggtgtgtcatgtttgtcgtaaggcatgtctggatacttttatggagcatgctattcattgtaagaagctttccggttttaagtacacatataac 6534315  T
Q  101 tttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagat 200  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||    
T  6534316 tttgttaaggatatactttttgatatatttaggtgggcgggagtatcaatgaagaaagagacgcatgtgaactttctgaataacccattagatagaagat 6534415  T
Q  201 cgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgcacatgtgaacttaagcaggattccaccacttgatgatttgtcgta 300  Q
    ||||| ||||||||||||||||||| |||||   |||||||||||||||||||| | || |||| ||||| |||||| ||||||||||||||||||||||    
T  6534416 cgacatttaaacatacatatgttattatgtatttatgggtaggaggaaaacatgtatatctgaatttaagtaggatttcaccacttgatgatttgtcgta 6534515  T
Q  301 aaaatattctaataaatatttgtaagatattgtttaaacaactaaaatgatactaacttctaaataaaaattaagtaataatagattcattacatatttg 400  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6534516 aaaatattctaataaatatttgtaagacgttgtttaaacaactaaaatgatactaacttctacataaaaattaagtaataatagattcattacatatttg 6534615  T
Q  401 actaactaataaaatt 416  Q
    | | ||||||| ||||    
T  6534616 atttactaatataatt 6534631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 407 - 644
Target Start/End: Original strand, 6534650 - 6534886
Alignment:
Q  407 taataaaattcataaacaatatttttaggacaattattaacagattcaataatagccttattaatataggcatggggtggagttgcaagagttgaaattg 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  6534650 taataaaattcataaacaatatttttaggacaattattaacagattcaataatagccttattaatatgggtatggggtggagttgcaagagttgaaattg 6534749  T
Q  507 aaagttgaaagaaacgaaatgcaagttggatgagcatgaatcacaatgtcacataaaatgtgtgggtataccctagggaatctgggtagggacaaggtag 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6534750 aaagttgaaagaaacgaaatgcaagttggatgagcatgaatcacaatgtcacat-aaatgtgtgggtataccctagggaatctgggtagggacaaggtag 6534848  T
Q  607 gaatcttctccaatacgttggcatctcattgtcatatt 644  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6534849 gaatcttctccaatacgttggcatctcattgtcatatt 6534886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 13166563 - 13166818
Alignment:
Q  1 tgatgagatgtgttatgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaac 100  Q
    ||||||| |||| | ||||||| ||||||| ||||||||||||||   | |||||||  ||||||||||| ||||||   | ||||| ||||    | ||    
T  13166563 tgatgaggtgtgctctgtttgttgtaaggcgtgtctggatactttcggggagcatgtcgttcattgtaaggagctttgtagctttaaatacaagcatgac 13166662  T
Q  101 tttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagat 200  Q
    ||||| ||||||||||||||||||||||| ||| |||||| ||||||| | ||||||||| ||| |||||||||||||| | | ||| ||||||||||||    
T  13166663 tttgtaagggatgtactttttgatatattcaggcgggcggaagtatcagtgaagaaggaagcgcctgtgaactttctgactgacccactagatagaagat 13166762  T
Q  201 cgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |||||||||| ||| |  |||||||| | ||||||||||| |||||||||||||||    
T  13166763 cgacacttaagcatgcggatgttatggtctacggatgggttggaggaaaacatgca 13166818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 27337132 - 27336892
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    |||||||||||||||||||||||||||||||| | ||||||   ||||||||||| | |||  ||| |||||||||| |  | |||||||||||||  ||    
T  27337132 tgtttgtcgtaaggcatgtctggatacttttagggagcatgccgttcattgtaaggaacttcccggctttaagtacatacttgactttgttagggacata 27337033  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacata 215  Q
    |||||||||||||| ||| | || ||||||||| | ||||| ||| | | |||||||||||||| | | ||| |||||||||||||||||||||  | |     
T  27337032 ctttttgatatattcaggcgagcaggagtatcagtgaagaaagaagctcctgtgaactttctgactgacccactagatagaagatcgacacttaggcctg 27336933  T
Q  216 catatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |  |||||||| ||||||||||||| |||||||||||||||    
T  27336932 cggatgttatggtgtacggatgggttggaggaaaacatgca 27336892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 15291676 - 15291932
Alignment:
Q  1 tgatgagatgtgttatgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaac 100  Q
    ||||||| ||||| |||||| ||||||||| |||||||||||||||  | |||||||| ||||||||||| |||||  ||| |||||||||| |  | ||    
T  15291676 tgatgaggtgtgtcatgtttatcgtaaggcgtgtctggatacttttggggagcatgttgttcattgtaaggagcttcccggctttaagtacaaacatgac 15291775  T
Q  101 tttgttagggatgtactttttgatatatttaggtgggcgggagtat---caataaagaaggaaacgcatgtgaactttctgaataatccattagatagaa 197  Q
    ||||||||||| ||||||||||||||||| || |||||||||||||   || | ||||||||| ||| ||||||||| |  | | | ||| |||||||||    
T  15291776 tttgttagggacgtactttttgatatattcagatgggcgggagtatcagcagtgaagaaggaagcgcctgtgaacttcccaactgacccactagatagaa 15291875  T
Q  198 gatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatg 254  Q
    |||| ||||| |  | | |  |||||||| ||||||| |||||||||||||||||||    
T  15291876 gatcaacactcaggcctgcgaatgttatggtgtacggctgggtaggaggaaaacatg 15291932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 38446604 - 38446365
Alignment:
Q  17 gtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtac 116  Q
    |||||||||||||| | ||| |||||||||| | ||| ||   ||||||||||| |||||  |   ||||||||||    | ||||||||||||||||||    
T  38446604 gtttgtcgtaaggcgtatctagatacttttagggagcgtgccgttcattgtaaggagcttcccaactttaagtacatgcatgactttgttagggatgtac 38446505  T
Q  117 tttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacatac 216  Q
    ||||||||||||| ||| |||||||||||||| | ||||||||  |||||||||| ||||||| | | ||  ||||||||| |||||||||||  ||| |    
T  38446504 tttttgatatattcaggcgggcgggagtatcagtgaagaaggaggcgcatgtgaattttctgactgaccctctagatagaatatcgacacttaggcatgc 38446405  T
Q  217 atatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    | |||||||| ||||||||||||| |||| ||||||||||    
T  38446404 aaatgttatggtgtacggatgggttggagtaaaacatgca 38446365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 35310887 - 35310647
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||| ||||||| |||||| ||||||||  | || ||||| ||||||||||| |||||| | | |||||||||| |  | ||||||||||||||||     
T  35310887 tgtttgttgtaaggcgtgtctgaatacttttggggagtatgttgttcattgtaaggagctttccagctttaagtacagacatgactttgttagggatgtc 35310788  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacata 215  Q
    ||||||||||||||  || | ||| |||||||| | ||||||||  ||| ||||||||| || | | | ||| ||||||||||||| |||||||  | |     
T  35310787 ctttttgatatattcgggcgagcgagagtatcagtgaagaaggaggcgcctgtgaacttcctaactgacccactagatagaagatcaacacttaggcttg 35310688  T
Q  216 catatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |  |||||||||||||||||||||| |||||||||||||||    
T  35310687 cggatgttatgatgtacggatgggttggaggaaaacatgca 35310647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 26212251 - 26212484
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||||||||||| || ||||||||||||  | |||||||  || |||||||| ||||| |||| |||||||||| |  | | |||||||||||||||    
T  26212251 tgtttgtcgtaaggcgtgcctggatacttttggggagcatgtcgtttattgtaaggagcttctcggctttaagtacatacatgattttgttagggatgta 26212350  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacata 215  Q
    |||||||||||||| | | ||| |||| ||||| | ||||||||  ||| ||||||||| |||| | | ||| ||||||||||||| ||||| |  |||     
T  26212351 ctttttgatatattca-gagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggcatg 26212449  T
Q  216 catatgttatgatgtacggatgggtaggaggaaaa 250  Q
    || |||| ||| ||||||| ||| |||| ||||||    
T  26212450 cagatgtgatggtgtacgggtggctaggtggaaaa 26212484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 433731 - 433491
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||||||||||| |||||||||||||||  | |||||||  ||||||||||| |||||  |   ||||||||||    | |||||||||||||||||    
T  433731 tgtttgtcgtaaggcgtgtctggatacttttggggagcatgtcgttcattgtaaggagcttcccaactttaagtacaggcatgactttgttagggatgta 433632  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacata 215  Q
    || ||||||||||| ||  |||||||| ||||  | ||||| ||  |||  ||||||||||||| |   ||| || |||||||||| |||||||  |||     
T  433631 ctatttgatatattcagacgggcgggaatatcggtgaagaaagaggcgcccgtgaactttctgactggcccactaaatagaagatccacacttaggcatg 433532  T
Q  216 catatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |  |||||||| ||||| ||||||| ||||||||| |||||    
T  433531 cggatgttatggtgtacagatgggttggaggaaaatatgca 433491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 60 - 249
Target Start/End: Original strand, 3113877 - 3114065
Alignment:
Q  60 ttcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaagga 159  Q
    ||||||||||| ||||||  || |||||||||| |  | |||||||||||||||| |||||||||||||| || ||||||||||||||| | ||||||||    
T  3113877 ttcattgtaaggagctttctggctttaagtacaaacatgactttgttagggatgtcctttttgatatattcagctgggcgggagtatcagtgaagaagga 3113976  T
Q  160 aacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaa 249  Q
      | | ||||||||| | || |   ||| ||||||||||||| |||||||  ||| || |||||||| |||||  ||||||| |||||||    
T  3113977 ggcccctgtgaacttgccgact-gcccactagatagaagatcaacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa 3114065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 99 - 256
Target Start/End: Original strand, 32269550 - 32269705
Alignment:
Q  99 actttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaag 198  Q
    ||||||||||||||||| ||||| ||||||| ||  | ||||||||| || | |||||| |  |||||||||  || || | | | ||| ||||||||||    
T  32269550 actttgttagggatgtaattttttatatattcagacgagcgggagtagcagtgaagaagaaggcgcatgtga--ttcctaactgacccactagatagaag 32269647  T
Q  199 atcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    ||| ||||| |||  | || |||||||| |||||||||||||||||||||||||||||    
T  32269648 atcaacactcaaatctgcagatgttatggtgtacggatgggtaggaggaaaacatgca 32269705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 166 - 250
Target Start/End: Complemental strand, 43129822 - 43129738
Alignment:
Q  166 tgtgaactttctgaataatccattagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaa 250  Q
    |||||||||||| | | ||| | |||||||||||||||||||||  ||| || |||||||||||||||||||| |||||||||||    
T  43129822 tgtgaactttcttactgatctactagatagaagatcgacacttaggcatgcagatgttatgatgtacggatggataggaggaaaa 43129738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 33691896 - 33691963
Alignment:
Q  189 tagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |||||||||||||||||||||| | | || |||||||| ||||||||||||| |||||||||||||||    
T  33691896 tagatagaagatcgacacttaagcctgcaaatgttatggtgtacggatgggttggaggaaaacatgca 33691963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 34335603 - 34335536
Alignment:
Q  189 tagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |||||||||||||||||||||  | | ||||||||||| |||||  ||| ||||||||||||||||||    
T  34335603 tagatagaagatcgacacttaggcttgcatatgttatggtgtacaaatgagtaggaggaaaacatgca 34335536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 3e-53; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 28516955 - 28517193
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||  ||||||||||| ||||| || | ||||||||||    | |||||||||||||||||    
T  28516955 tgtttgtcgtaaggcatgtttggatacttttatgaagcatgtcgttcattgtaaggagcttctcagctttaagtacaagcatgactttgttagggatgta 28517054  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacata 215  Q
    |||||||||||||| ||| | ||||||| |||  | ||||||||  ||| |||||||||||||| | | ||| |||||||||||||||||||||  | |     
T  28517055 ctttttgatatattcaggcgagcgggagcatcggtgaagaaggaggcgcctgtgaactttctgactgacccactagatagaagatcgacacttaggcctg 28517154  T
Q  216 catatgttatgatgtacggatgggtaggaggaaaacatg 254  Q
    || |||||||| ||||||||||||| |||||||||||||    
T  28517155 caaatgttatggtgtacggatgggttggaggaaaacatg 28517193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 4501712 - 4501457
Alignment:
Q  1 tgatgagatgtgttatgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaac 100  Q
    ||||||| ||||| |||||||||||||||| || ||||||||||||  | | |||||  ||||||||||| |||||  ||  ||||||||||||    ||    
T  4501712 tgatgaggtgtgtcatgtttgtcgtaaggcgtgcctggatacttttggggaccatgtcgttcattgtaaggagcttcccgactttaagtacacacacgac 4501613  T
Q  101 tttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagat 200  Q
    ||| ||||||||||||||||||||||||| || | ||||||||||||||| ||||| ||   || ||||||||| |||||| | ||| ||||||||||||    
T  4501612 tttattagggatgtactttttgatatattcagataggcgggagtatcaatgaagaaagaggtgcttgtgaacttcctgaatgacccactagatagaagat 4501513  T
Q  201 cgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
      ||||| |  |   |  |||||||| ||||||||| |||||||||||||||||||    
T  4501512 aaacactcaggccagcggatgttatggtgtacggataggtaggaggaaaacatgca 4501457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 32585584 - 32585393
Alignment:
Q  18 tttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtact 117  Q
    |||||||||||||||||||||||||||||  | |||||||  ||||| ||||| ||||| |||  ||||||||||    | |||||||||||| ||| |     
T  32585584 tttgtcgtaaggcatgtctggatacttttggggagcatgtcgttcatggtaaggagcttctcgactttaagtacaggcatgactttgttaggggtgtgcc 32585485  T
Q  118 ttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacactta 209  Q
    |||||||||||| |||||||| ||||||| | | ||||||||  |||||||||||||||||||| | | | |||||| ||||| ||||||||    
T  32585484 ttttgatatattcaggtgggcaggagtataagtgaagaaggaggcgcatgtgaactttctgaatgacctactagataaaagattgacactta 32585393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 10905540 - 10905293
Alignment:
Q  18 tttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtact 117  Q
    ||||||||||||| || ||||||||||||  | |||||||| ||||||||||| ||||| |||| |||||||| |  | | | ||| ||||| |||||||    
T  10905540 tttgtcgtaaggcttgcctggatacttttggggagcatgttgttcattgtaaggagcttctcgggtttaagtataagtatgagttttttaggaatgtact 10905441  T
Q  118 ttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacataca 217  Q
    |||||||||||  |||  ||||||||||||| | ||||||||   || | ||||||||||   | ||||| |||||| ||||||||||||||  | | ||    
T  10905440 ttttgatatatccaggaaggcgggagtatcagtgaagaaggaggagcctatgaactttcttgttgatccactagatataagatcgacacttaggcctgca 10905341  T
Q  218 tatgttatgatgtacggatgggtaggaggaaaacatgcacatgtgaactt 267  Q
     ||||  || ||||||||||| |||||||||||||||||  |||||||||    
T  10905340 gatgt--tggtgtacggatggataggaggaaaacatgcatgtgtgaactt 10905293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 47679563 - 47679327
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtaca-catgtaactttgttagggatgt 114  Q
    |||||||||||||||  |  |||||||||||  | |||| ||  || ||||||||||||||  ||  |||||||||| || |  ||||||||||||||||    
T  47679563 tgtttgtcgtaaggcgcgcttggatacttttggggagcacgtcgtttattgtaagaagcttcccgactttaagtacatcacg--actttgttagggatgt 47679466  T
Q  115 actttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacat 214  Q
    ||||||||||||||| ||| ||||||| |||||| | ||||||||  ||| |||||||||||||| | |  || ||||||||||||||||||||  || |    
T  47679465 actttttgatatattcaggcgggcgggggtatcagtgaagaaggagtcgcgtgtgaactttctgactgacgcactagatagaagatcgacactttgactt 47679366  T
Q  215 acatatgttatgatgtacggatgggtaggaggaaaacat 253  Q
    ||  |||| |||  || || |||||||||||||||||||    
T  47679365 acgaatgtaatggcgtgcgaatgggtaggaggaaaacat 47679327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 99 - 256
Target Start/End: Original strand, 45613593 - 45613750
Alignment:
Q  99 actttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaag 198  Q
    ||||||||||||||||||||||||||||||| ||  |||| ||||||||| | |||||||| |||  ||||||||| |||| | | ||  |||| |||||    
T  45613593 actttgttagggatgtactttttgatatattcagacgggcaggagtatcagtgaagaaggagacgtctgtgaacttcctgactgacccgctagaaagaag 45613692  T
Q  199 atcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    ||| ||||| |  | | |  ||||||||||||||| ||||||||||||||||||||||    
T  45613693 atcaacactcaggcctgcggatgttatgatgtacgaatgggtaggaggaaaacatgca 45613750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 98 - 255
Target Start/End: Complemental strand, 3676997 - 3676840
Alignment:
Q  98 aactttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaa 197  Q
    ||||||||| | |||||||||||||||||||| ||  |||||||| ||||||| ||||||||  | | ||||||||| |||| | | ||| |||||||||    
T  3676997 aactttgtttgagatgtactttttgatatattcagacgggcgggaatatcaatgaagaaggaggcacctgtgaacttcctgactgacccaatagatagaa 3676898  T
Q  198 gatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgc 255  Q
     ||| ||||| |  | |  | |||||||| |||| ||||||||||| |||||||||||    
T  3676897 aatcaacactcaggcttgtagatgttatggtgtagggatgggtaggtggaaaacatgc 3676840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 24528029 - 24527916
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||||||||||| |  ||||||||||||  | ||||||   ||||||| ||| |||||||||| |||||||||| |  | ||||||| |||||||||    
T  24528029 tgtttgtcgtaaggcgtacctggatacttttggggagcatgccgttcattgcaaggagcttttcggctttaagtacagacatgactttgtgagggatgta 24527930  T
Q  116 ctttttgatatatt 129  Q
    ||||||||||||||    
T  24527929 ctttttgatatatt 24527916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 19277729 - 19277493
Alignment:
Q  18 tttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtact 117  Q
    ||||||||||||| |||||||||||||||  | |||||||  ||||||||||| || ||| ||  |||||| ||| |  | |||||||||||||||| ||    
T  19277729 tttgtcgtaaggcgtgtctggatacttttggggagcatgtcgttcattgtaagtagttttccgactttaag-acatacatgactttgttagggatgttct 19277631  T
Q  118 ttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacataca 217  Q
    |||| ||||| | ||  |||| ||| ||||| | ||||||||  | | | | ||||| |||| | |  || ||||||||||||| ||||| |  | | |     
T  19277630 tttttatatactcagacgggcaggaatatcagtgaagaaggaggcacctataaacttcctgactgacgcactagatagaagatcaacactcaggcctgcg 19277531  T
Q  218 tatgttatgatgtacggatgggtaggaggaaaacatgc 255  Q
     |||||||| | |||||||||||||| |||||||||||    
T  19277530 gatgttatggtctacggatgggtaggtggaaaacatgc 19277493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 43857140 - 43857076
Alignment:
Q  189 tagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacat 253  Q
    ||||||||||||| |||||||  | | || |||||||| |||||||||||||||||| |||||||    
T  43857140 tagatagaagatcaacacttaggcctgcagatgttatggtgtacggatgggtaggagaaaaacat 43857076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 38839595 - 38839526
Alignment:
Q  186 cattagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |||||||||||||||||||  ||| ||||| | |||||||| |||||||||| ||| || |||||||||||    
T  38839595 cattagatagaagatcgacggttagacatatagatgttatggtgtacggatgtgtaaga-gaaaacatgca 38839526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 9e-44; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 34304933 - 34304695
Alignment:
Q  19 ttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtactt 118  Q
    |||||||||| |||||||||||||||||  | |||||||| |||| |||||| ||||| |||| ||||||||||    | ||||||||||||||||||||    
T  34304933 ttgtcgtaagacatgtctggatacttttggggagcatgttgttcactgtaaggagcttctcggctttaagtacatgcatgactttgttagggatgtactt 34304834  T
Q  119 tttg-atatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacataca 217  Q
    |||  ||||||| |||  ||| ||||||||| | |||||||| ||||||||||||||||||| | | ||| |||||||||||||||||||||  | | |     
T  34304833 tttttatatattcaggcaggcaggagtatcagtgaagaaggagacgcatgtgaactttctgactgacccactagatagaagatcgacacttaggcctgcg 34304734  T
Q  218 tatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
     |||||||| ||||||||||||  |||||||||||||||    
T  34304733 gatgttatggtgtacggatgggctggaggaaaacatgca 34304695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 357370 - 357625
Alignment:
Q  1 tgatgagatgtgttatgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaac 100  Q
    ||||||| |||||  | |||| |||||||| |||||||||||||||  | |||||||  ||||||||||| || |||  ||||| |||||||    |  |    
T  357370 tgatgaggtgtgtcctttttgacgtaaggcgtgtctggatacttttggggagcatgtcgttcattgtaaggagatttctggtttaaagtacatgcatgcc 357469  T
Q  101 tttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagat 200  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||| | ||||||||  | | |||||||||| ||| | |  || ||||||||||||    
T  357470 tttgttagggatgtactttttgatatattcaggcgggcgggagtatcagtgaagaaggaggcccttgtgaactttttgactgacacactagatagaagat 357569  T
Q  201 cgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |||||||||   || || |||||||| |||| |||||||| |||| ||||||||||    
T  357570 cgacacttaggtatgcagatgttatggtgtatggatgggttggagcaaaacatgca 357625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 32116128 - 32115888
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||||||||||  || ||||||||||||  | |||||||   ||||||| || |||||  |   |||||||||| |  | |||||||||||||||||    
T  32116128 tgtttgtcgtaaggtgtgcctggatacttttggggagcatgtcgctcattgtgaggagcttcccaactttaagtacatacatgactttgttagggatgta 32116029  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacata 215  Q
    ||||||||||||||| |  |||||||||||||| | ||||| ||  ||||||||||||| |||| | | | | ||||||||||||| ||||| |  | |     
T  32116028 ctttttgatatattttgacgggcgggagtatcagtgaagaaagaggcgcatgtgaacttcctgactgacctactagatagaagatcaacactcaggcctg 32115929  T
Q  216 catatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |  |||||||| ||||| |||| ||||||||||||||||||    
T  32115928 cggatgttatggtgtacagatgagtaggaggaaaacatgca 32115888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 45337 - 45576
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||||||||||  || || |||||||||  | |||||||  |||  |||||| ||||| |||| |||||||||| |  | |||||||||||||||||    
T  45337 tgtttgtcgtaaggtgtgccttgatacttttggggagcatgtcgttcggtgtaaggagcttctcgggtttaagtacatacatgactttgttagggatgta 45436  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacata 215  Q
    ||||||||||||||  |  |||||||| ||||| | ||||||||  ||  | |||||||||||| | | ||| ||||||||||||| ||||| |  | |     
T  45437 ctttttgatatattctgacgggcgggaatatcagttaagaaggaggcgtctttgaactttctgactgacccactagatagaagatcaacactcaggcctg 45536  T
Q  216 catatgttatgatgtacggatgggtaggaggaaaacatgc 255  Q
    || |||| ||| |||||||||||||||  |||||||||||    
T  45537 cagatgtgatggtgtacggatgggtagatggaaaacatgc 45576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 99 - 256
Target Start/End: Complemental strand, 12401687 - 12401530
Alignment:
Q  99 actttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaag 198  Q
    ||||||||||  ||||||||||||||||||| ||| ||||| |||||| | | ||||||||  ||| ||||||||| |||| | | | | ||||||| ||    
T  12401687 actttgttagaaatgtactttttgatatattcaggcgggcgagagtattagtgaagaaggaggcgcctgtgaacttcctgactgacctactagatagcag 12401588  T
Q  199 atcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    ||| | ||||||   | || |||||||| |||||||||||||||||||||||||||||    
T  12401587 atcaagacttaagtctgcaaatgttatggtgtacggatgggtaggaggaaaacatgca 12401530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 51 - 145
Target Start/End: Original strand, 14538642 - 14538736
Alignment:
Q  51 agcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtactttttgatatatttaggtgggcgggagta 145  Q
    ||||||| |||| ||||||| ||||| | |  |||||||||| |  |||||||||||| ||||| |||||||||||||| |||||||||||||||    
T  14538642 agcatgtcattcgttgtaaggagcttcttgactttaagtacatacataactttgttagagatgtcctttttgatatattgaggtgggcgggagta 14538736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 60 - 285
Target Start/End: Original strand, 20693312 - 20693537
Alignment:
Q  60 ttcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtactttttgatatattt-aggtgggcgggagtatcaataaagaagg 158  Q
    ||||||||||| ||||| | |  |||||||||| |  | ||||| |||||| |||  |||||||||||||| ||| | | |||||||||  |||||||||    
T  20693312 ttcattgtaaggagcttcttgactttaagtacaaacatgactttattagggttgtcatttttgatatattttaggcgagtgggagtatcggtaaagaagg 20693411  T
Q  159 aaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgcaca 258  Q
    | || | |||||||||| ||| | | | | |||||| |||||| |||||||  | | || || ||||| ||||| ||||||||||||||||||||||  |    
T  20693412 agactcttgtgaactttttgattgaccaactagataaaagatccacacttaggcctgcagatattatggtgtacagatgggtaggaggaaaacatgc-ta 20693510  T
Q  259 tgtgaacttaagcaggattccaccact 285  Q
    ||||||||| | |||| || |||||||    
T  20693511 tgtgaacttgatcagggtttcaccact 20693537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 29337753 - 29337991
Alignment:
Q  15 atgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgt 114  Q
    |||||| |||||||||||| |||||||||| |  | |||||||  ||||||||||| |||||    | ||||||||||||  |||||||||||||||||     
T  29337753 atgtttctcgtaaggcatgcctggatacttgtggggagcatgtagttcattgtaagtagcttcctagctttaagtacacacataactttgttagggatgc 29337852  T
Q  115 actttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacat 214  Q
      ||| ||||||||| ||  | |||||| |||||   ||||||| |  || | |||||||   || | | ||| |||||||||| ||||||||||  | |    
T  29337853 catttatgatatattaag--gcgcgggaatatcagcgaagaagg-agggcttttgaacttctggattgacccactagatagaagttcgacacttaggcct 29337949  T
Q  215 acatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
     || |||||||| ||| | |||||||||||||||||||||||    
T  29337950 gcagatgttatggtgtgcagatgggtaggaggaaaacatgca 29337991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 4206264 - 4206504
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcg-gttttaagtacacatgtaactttgttagggatgt 114  Q
    ||||||||||||||| || ||||||||||||  | ||||||   |||| |||||| || ||| || | |||||||||| |  | ||||||||||||||||    
T  4206264 tgtttgtcgtaaggcgtgcctggatacttttggggagcatgccgttcactgtaaggag-tttccgagctttaagtacatacatgactttgttagggatgt 4206362  T
Q  115 actttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacat 214  Q
    ||||||||||||||| ||  | | |||| ||||| | ||||||||  | |  ||||||||  ||| | | ||| |||||| |||||| ||||| || | |    
T  4206363 actttttgatatattcagacgtgtgggaatatcagtgaagaaggaggcacccgtgaacttcttgattgacccactagataaaagatcaacactcaagcct 4206462  T
Q  215 acatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
     |  |||||||| |||||  |||||| |||||||||||||||    
T  4206463 gcggatgttatggtgtacaaatgggttggaggaaaacatgca 4206504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 33220551 - 33220619
Alignment:
Q  188 ttagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    ||||||||||||| |||||| |  | | || ||||||||||||||||||| || |||||||||||||||    
T  33220551 ttagatagaagattgacactcaggcctgcagatgttatgatgtacggatgagttggaggaaaacatgca 33220619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 22882544 - 22882583
Alignment:
Q  101 tttgttagggatgtactttttgatatatttaggtgggcgg 140  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  22882544 tttgttagggatgtcttttttgatatatttaggtgggcgg 22882583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 22900479 - 22900518
Alignment:
Q  101 tttgttagggatgtactttttgatatatttaggtgggcgg 140  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  22900479 tttgttagggatgtcttttttgatatatttaggtgggcgg 22900518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 28543611 - 28543574
Alignment:
Q  219 atgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  28543611 atgttatgatgtacagatggataggaggaaaacatgca 28543574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 228 - 256
Target Start/End: Complemental strand, 959807 - 959779
Alignment:
Q  228 tgtacggatgggtaggaggaaaacatgca 256  Q
    |||||||||||||||||||||||||||||    
T  959807 tgtacggatgggtaggaggaaaacatgca 959779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 7200322 - 7200354
Alignment:
Q  97 taactttgttagggatgtactttttgatatatt 129  Q
    |||||||||||||||||| ||||||||||||||    
T  7200322 taactttgttagggatgtcctttttgatatatt 7200354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 4e-43; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 3330390 - 3330149
Alignment:
Q  15 atgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgt 114  Q
    |||||||||||||||| |||||| ||||||||  | ||||||  |||||||||||| |||||  ||| ||||||||||    | ||||||||||||||||    
T  3330390 atgtttgtcgtaaggcgtgtctgtatacttttggggagcatgccattcattgtaaggagcttcccggctttaagtacaggcatgactttgttagggatgt 3330291  T
Q  115 actttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacat 214  Q
    ||||||||||||||| ||| | |||||||||||| | ||||||||  | | |||||||||||||| | | ||| ||||||||||||| |||||||  |||    
T  3330290 actttttgatatattcaggcgagcgggagtatcagtgaagaaggaggcacctgtgaactttctgactgacccactagatagaagatcaacacttaggcat 3330191  T
Q  215 acatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
     || |||||||| ||||||||||| | |||||||||| ||||    
T  3330190 gcagatgttatggtgtacggatggattggaggaaaacgtgca 3330149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 31 - 256
Target Start/End: Original strand, 50000608 - 50000833
Alignment:
Q  31 atgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtactttttgatatattt 130  Q
    ||||||||||||||||  ||||||||   ||||||||||| |||||  ||  ||||| |||| |  | ||||||||| |||||||||||||||||||||     
T  50000608 atgtctggatacttttgggaagcatgccgttcattgtaaggagcttcccgactttaaatacagacatgactttgttaaggatgtactttttgatatattc 50000707  T
Q  131 aggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacatacatatgttatgatgt 230  Q
    ||| | || ||||||||||| ||||||||  ||| |||||||||||||| | | ||| |||||||||||||||||||||  | | |  |||||||| |||    
T  50000708 aggcgagcaggagtatcaatgaagaaggaggcgcctgtgaactttctgactgacccactagatagaagatcgacacttaggcctgcggatgttatggtgt 50000807  T
Q  231 acggatgggtaggaggaaaacatgca 256  Q
    |||||||||| |||||||||||||||    
T  50000808 acggatgggttggaggaaaacatgca 50000833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 100 - 256
Target Start/End: Complemental strand, 26521843 - 26521687
Alignment:
Q  100 ctttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaaga 199  Q
    |||||||||||||||||||||||||||||||||  || || |||||||| | ||||| ||  ||||||||| |||||||| | | ||| |||||||||||    
T  26521843 ctttgttagggatgtactttttgatatatttagacggacgagagtatcattgaagaatgaggcgcatgtgagctttctgactgacccactagatagaaga 26521744  T
Q  200 tcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |||||| |||| | |||  | |||||| ||||| || ||||||||||||||||||||    
T  26521743 tcgacatttaagcctacgaaggttatggtgtacagacgggtaggaggaaaacatgca 26521687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 25706812 - 25706708
Alignment:
Q  152 aagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaac 251  Q
    ||||||||  |||||||||||||||||| | | ||| |||||||||||||||||||||| | ||| ||||||||| ||||| |||||||||||| |||||    
T  25706812 aagaaggaggcgcatgtgaactttctgactgacccactagatagaagatcgacacttaagcctacgtatgttatggtgtacagatgggtaggagaaaaac 25706713  T
Q  252 atgca 256  Q
    |||||    
T  25706712 atgca 25706708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 51 - 256
Target Start/End: Original strand, 56461816 - 56462015
Alignment:
Q  51 agcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtactttttgatatatttaggtgggcgggagtatcaat 150  Q
    |||||||  |||| |||||| |||||   ||||||||||| |  ||| ||||||||||||||||||||||||||||||| ||| | || ||||||||| |    
T  56461816 agcatgtcgttcactgtaaggagcttcctggttttaagtataggtgtgactttgttagggatgtactttttgatatattcaggcgtgcaggagtatcagt 56461915  T
Q  151 aaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaa 250  Q
     || |||||       ||||| || |||  | ||||| |||||||||||||||||||||| ||| |  |||||||| |||||||||| ||||| ||||||    
T  56461916 gaataaggag------gtgaaattcctggctgatccactagatagaagatcgacacttaagcatgcgaatgttatggtgtacggatgagtaggtggaaaa 56462009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 51 - 267
Target Start/End: Complemental strand, 132789 - 132575
Alignment:
Q  51 agcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtactttttgatatatttaggtgggcgggagtatcaat 150  Q
    |||||||  ||||||||||| |||||| |||||||||||| |    | |||||||||||||||||||||| |||||||| ||| |||| ||||||| | |    
T  132789 agcatgtcgttcattgtaaggagctttccggttttaagtataatcatgactttgttagggatgtactttt-gatatattcaggcgggcaggagtattagt 132691  T
Q  151 aaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaa 250  Q
     || || ||  |||||||||||||  ||| |  |||| ||||||||||||||||||||   ||| || |||||||| ||||| |||  ||||||||||||    
T  132690 gaaaaaagat-cgcatgtgaacttcttgactggtccactagatagaagatcgacacttcggcatgcagatgttatggtgtacagatacgtaggaggaaaa 132592  T
Q  251 catgcacatgtgaactt 267  Q
     |||||  |||||||||    
T  132591 tatgcatgtgtgaactt 132575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 12918019 - 12918280
Alignment:
Q  1 tgatgagatgtgttatgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaag-------cttttcggttttaagtacac 93  Q
    ||||||||||||  |||||||||||||||  |||||||||||||||  ||| ||||| |||||||||||| ||       |||  ||  ||||||||||     
T  12918019 tgatgagatgtgccatgtttgtcgtaaggtgtgtctggatacttttgagaaacatgtcattcattgtaaggagcatcctacttcccgactttaagtacat 12918118  T
Q  94 atgtaactttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagat 193  Q
     | | ||||||||||||||||||||||||||||||| ||| ||||||||| || | | || |||||    | |||||||||||| | | | ||| |||||    
T  12918119 gtatgactttgttagggatgtactttttgatatattcaggcgggcgggagcattagtgaa-aaggatggacctgtgaactttctaactgacccactagat 12918217  T
Q  194 agaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    ||||||||||||||||  | |    |||| ||| |||| ||||||||| ||||||||||||||    
T  12918218 agaagatcgacacttaggcctgtggatgtcatggtgtatggatgggtaagaggaaaacatgca 12918280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 16957975 - 16957735
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||||||||||| || || |||||||||  | ||||| |  ||||||||||| |||||   |  |||||||||| |  | ||||| |||||||||||    
T  16957975 tgtttgtcgtaaggcgtgcctagatacttttggggagcatatcgttcattgtaaggagcttcctgactttaagtacatacatgacttttttagggatgta 16957876  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacata 215  Q
    |||||||||||||| ||  |||| ||||||||| | | | ||||  ||| ||||||||| |||| | | ||  |||||| |||||| |||||||  | |     
T  16957875 ctttttgatatattcagacgggcaggagtatcagtgaggtaggaggcgcctgtgaacttcctgactgacccgctagataaaagatcaacacttaggcctg 16957776  T
Q  216 catatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    || |||||||| |||||||||||||||| | ||||||||||    
T  16957775 cagatgttatggtgtacggatgggtaggtgtaaaacatgca 16957735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 34952610 - 34952401
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||||||||| | |||||| ||||||||  | ||||||   || | |||||| ||||| ||   |||||||||| |  | ||||||||||||||||     
T  34952610 tgtttgtcgtaagacgtgtctgaatacttttggggagcatgccgtttaatgtaaggagcttctctactttaagtacatacatgactttgttagggatgtc 34952511  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacata 215  Q
     ||||||||||||| ||| ||||| |||||||| | ||||||||  |||||||||||||      | |||||||||||||| |||| |||||||||| |     
T  34952510 atttttgatatattaaggcgggcgagagtatcagtgaagaaggaggcgcatgtgaactt------tgatccattagatagaggatcaacacttaaacctg 34952417  T
Q  216 catatgttatgatgta 231  Q
    || |||||||||||||    
T  34952416 caaatgttatgatgta 34952401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 6865630 - 6865721
Alignment:
Q  165 atgtgaactttctgaataatccattagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    ||||||||||||| | | ||| |||||||||||||| ||||||||   || |  ||||||||||||||| ||||||||||||||||||||||    
T  6865630 atgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgca 6865721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 255
Target Start/End: Original strand, 30940508 - 30940646
Alignment:
Q  117 tttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacatac 216  Q
    ||||||||||||| ||  |||||||| ||||| | ||||||||  | | ||||||||| |||| | | ||| ||||||||||||| ||||| |  | |||    
T  30940508 tttttgatatattcagacgggcgggaatatcagtgaagaaggaggcacctgtgaacttcctgactgacccactagatagaagatcaacactaaggcctac 30940607  T
Q  217 atatgttatgatgtacggatgggtaggaggaaaacatgc 255  Q
      |||||||| |||||| ||||||||| |||||||||||    
T  30940608 gaatgttatggtgtacgaatgggtaggtggaaaacatgc 30940646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 256
Target Start/End: Complemental strand, 31847434 - 31847286
Alignment:
Q  105 ttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgac 204  Q
    ||||||| ||||||||||||||||| ||| | | |||||||||| |   ||||||  ||| |||||||||||||| | | ||| |||||| ||||| |||    
T  31847434 ttagggacgtactttttgatatattcaggcgagtgggagtatcagt---gaaggaggcgcctgtgaactttctgactgacccactagataaaagattgac 31847338  T
Q  205 acttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |||||  | | || || ||||| ||||| ||||| | |||||||||||||||    
T  31847337 acttaggcctgcagatattatggtgtacagatggattggaggaaaacatgca 31847286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 53098642 - 53098594
Alignment:
Q  219 atgttatgatgtacggatgggtaggaggaaaacatgcacatgtgaactt 267  Q
    |||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  53098642 atgttatggtgtacggatgggtaggaggaaaacatgcaaatgtggactt 53098594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 109 - 256
Target Start/End: Complemental strand, 12053756 - 12053610
Alignment:
Q  109 ggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacactt 208  Q
    ||||||||||||| ||||||| ||| |  || |||||||| | ||||||   |||| ||| ||||| |||| | ||||| ||||||||||||||| ||||    
T  12053756 ggatgtacttttt-atatattcaggcgcacgagagtatcagtgaagaagtggacgcttgtaaacttcctgactgatccactagatagaagatcgagactt 12053658  T
Q  209 aaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
         | || |||||||| ||||| |||||||||||||||||||||||    
T  12053657 tggtctgcagatgttatgttgtacagatgggtaggaggaaaacatgca 12053610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 18534666 - 18534599
Alignment:
Q  189 tagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    ||||| |||||||||||||||  | |||| |||||||| | ||||||||||||| |||||||||||||    
T  18534666 tagattgaagatcgacacttaggcctacaaatgttatggtatacggatgggtagaaggaaaacatgca 18534599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 99 - 256
Target Start/End: Complemental strand, 25504650 - 25504492
Alignment:
Q  99 actttgttagggatgtacttttt-gatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaa 197  Q
    |||||||||| |||||||||||| |||||||| |   ||||| ||| |||| | ||||| ||  | |||||||||||  |||   | ||| |||||||||    
T  25504650 actttgttagagatgtacttttttgatatattcaaacgggcgagagcatcagtgaagaacgaggcacatgtgaacttcttgatagacccactagatagaa 25504551  T
Q  198 gatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    | |  ||||| | |||| |  |||||||| |||||||||||||||||| ||||||||||    
T  25504550 gtttaacactcagacatgcggatgttatggtgtacggatgggtaggagaaaaacatgca 25504492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 53170937 - 53170828
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||||||||||| || ||| ||||||||  | |||||||  ||||||||||| |||||  | | | |||||||| |  | |||||| ||||||||||    
T  53170937 tgtttgtcgtaaggcgtgcctgaatacttttggggagcatgtcgttcattgtaaggagcttccccgctctaagtacagacatgactttg-tagggatgta 53170839  T
Q  116 ctttttgatat 126  Q
    |||||||||||    
T  53170838 ctttttgatat 53170828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 53619825 - 53619785
Alignment:
Q  216 catatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    ||||||||||| |||||||||| || |||||||||||||||    
T  53619825 catatgttatggtgtacggatgagttggaggaaaacatgca 53619785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 28225454 - 28225199
Alignment:
Q  1 tgatgagatgtgttatgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaac 100  Q
    ||||||| ||||  |||||||||||||| | ||||| |||||||||  | ||||||   ||||||||||| || ||| ||| ||||||||||    | ||    
T  28225454 tgatgaggtgtgccatgtttgtcgtaagacgtgtctagatacttttggggagcatgccgttcattgtaaggagttttccggctttaagtacaggcatgac 28225355  T
Q  101 tttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagat 200  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||  | |||| |||   || |||||||||||||| | | ||| ||||||||| ||    
T  28225354 tttgttagggatgtactttttgatatattcaggtggtcgggagtatcggtgaagagggaggtgcctgtgaactttctgacttacccactagatagaatat 28225255  T
Q  201 cgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |||||||||  | |||  |||||||| ||||||||||||| |||||||||||||||    
T  28225254 cgacacttaggcctacggatgttatggtgtacggatgggttggaggaaaacatgca 28225199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 20142408 - 20142647
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||||||||||| |||||||||||||||  | |||||||  ||||||||||| |||||   || |||||||||| |  | |||||||||||||||||    
T  20142408 tgtttgtcgtaaggcgtgtctggatacttttggggagcatgtcgttcattgtaaggagcttccaggctttaagtacagacatgactttgttagggatgta 20142507  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacata 215  Q
    |||||||||||||| ||  |||||||| ||||| | ||||||||  ||  | ||||||| |||| | | ||| ||||||||||||| ||||| |||| |     
T  20142508 ctttttgatatattcagacgggcgggaatatcagtgaagaaggaggcgtctatgaacttcctgactgacccagtagatagaagatcaacactcaaacctg 20142607  T
Q  216 catatgttatgatgtacggatgggtaggaggaaaacatgc 255  Q
    || |  ||||| |||||||||||||||| |||||||||||    
T  20142608 cagacattatggtgtacggatgggtaggtggaaaacatgc 20142647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 17345077 - 17344837
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||||||||||| || ||||||||||||  | |||||||  ||||||||||| | |||   || |||||||||| |    |||||||||||||||||    
T  17345077 tgtttgtcgtaaggcgtgcctggatacttttggggagcatgtcgttcattgtaaggaacttcctggctttaagtacagacacgactttgttagggatgta 17344978  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacata 215  Q
    |||||||||||||| ||  |||| ||||||||| | ||||||||  ||| |||||||||||||| | | ||  |||| |||||||| ||||| |  |||     
T  17344977 ctttttgatatattcagacgggcaggagtatcagtgaagaaggaggcgcctgtgaactttctgactgacccgctagaaagaagatcaacactcaggcatg 17344878  T
Q  216 catatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |  |||||||| |||||||||||||||||||||||||||||    
T  17344877 cggatgttatggtgtacggatgggtaggaggaaaacatgca 17344837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 4412734 - 4412973
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    |||| |||||||||| |||||||||||||||  | |||||||  ||||||||||| |||||| ||| ||||||| || |  | |||||||||||||||||    
T  4412734 tgttggtcgtaaggcgtgtctggatacttttggggagcatgtcgttcattgtaaggagctttccggctttaagtgcagacatgactttgttagggatgta 4412833  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacata 215  Q
    |||||||||||||| |   |||||||| ||||| | ||||||||  | | ||||||||| |||| | | ||| ||||||||||||| ||||| |  | |     
T  4412834 ctttttgatatattcaaacgggcgggaatatcagtgaagaaggaggcacctgtgaacttcctgactgacccactagatagaagatcaacactcaggcctg 4412933  T
Q  216 catatgttatgatgtacggatgggtaggaggaaaacatgc 255  Q
    |  |||||||| |||||||||||||||| |||||||||||    
T  4412934 cggatgttatggtgtacggatgggtaggtggaaaacatgc 4412973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 41867561 - 41867815
Alignment:
Q  1 tgatgagatgtgttatgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaac 100  Q
    ||||||| |||| | ||||||||||||| | |||||||||||||||  | ||||||  |||||||||||| |||||  ||| |||||||||| | || ||    
T  41867561 tgatgaggtgtgctctgtttgtcgtaagtcgtgtctggatacttttggggagcatgccattcattgtaaggagcttcccggctttaagtacagacgtgac 41867660  T
Q  101 tttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagat 200  Q
    |||||||||||||| |||||||||||||| |   |||||||| ||||| | ||||||||  | | ||||||||| |||| | | ||| ||||||||||||    
T  41867661 tttgttagggatgttctttttgatatattcatacgggcgggaatatcagtgaagaaggaggcacctgtgaacttcctgactgacccactagatagaagat 41867760  T
Q  201 cgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgc 255  Q
    | ||||| |  | | |  |||||||| ||||| |||||||||| |||||||||||    
T  41867761 caacactcaggcctgcggatgttatggtgtacagatgggtaggtggaaaacatgc 41867815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 27502715 - 27502560
Alignment:
Q  101 tttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagat 200  Q
    |||||||| |||||||||||||||||||| | ||| |||||||||||| | ||||||||  ||| |||||||||||||| | | ||| |||||  |||||    
T  27502715 tttgttagagatgtactttttgatatattcaagtgagcgggagtatcactgaagaaggaggcgcctgtgaactttctgactgacccactagatgcaagat 27502616  T
Q  201 cgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |||||||||  | | |  |||||||| ||||||||||||| |||||||||||||||    
T  27502615 cgacacttaggcctgcggatgttatggtgtacggatgggttggaggaaaacatgca 27502560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 105 - 256
Target Start/End: Complemental strand, 9675194 - 9675043
Alignment:
Q  105 ttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgac 204  Q
    ||||||||| ||||||| |||||||||||  || ||||||| |||| ||||| ||  ||| ||||||||||||||   | | |||| ||| |||||||||    
T  9675194 ttagggatgcacttttttatatatttaggcaggagggagtagcaatgaagaatgaggcgcctgtgaactttctgaccgaccgattaaataaaagatcgac 9675095  T
Q  205 acttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    ||||| |||| || ||||||||||||||| ||| ||||||||||||||||||    
T  9675094 acttagacatgcagatgttatgatgtacgaatgagtaggaggaaaacatgca 9675043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 44686871 - 44686664
Alignment:
Q  1 tgatgagatgtgttatgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaac 100  Q
    ||||||| |||||  |||||||||||||   |||||||||||||||  || |||||| |||||||||||| |||||  ||| ||||||||||    | |     
T  44686871 tgatgaggtgtgtcctgtttgtcgtaagatgtgtctggatacttttggga-gcatgtcattcattgtaaggagcttcccggctttaagtacatgcatcat 44686773  T
Q  101 tttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagat 200  Q
    ||||||||  ||||||||||||||||||| ||  |||||||||||||| | ||||||||   || |||||||||| ||| | ||| | ||||||||||||    
T  44686772 tttgttagatatgtactttttgatatattcagacgggcgggagtatcagtgaagaaggaggggcctgtgaactttgtgactgatctactagatagaagat 44686673  T
Q  201 cgacactta 209  Q
     ||||||||    
T  44686672 tgacactta 44686664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 23484782 - 23484846
Alignment:
Q  192 atagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |||||||||| ||||| || ||| |||||||||||||||||||||||||||||||||||||||||    
T  23484782 atagaagatcaacactcaagcatgcatatgttatgatgtacggatgggtaggaggaaaacatgca 23484846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 9685083 - 9685226
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||||||||||| |||||||||||||||  | |||  ||  ||||||||||| |||||  ||| |||||||||| |  | |||||||||||||||||    
T  9685083 tgtttgtcgtaaggcgtgtctggatacttttggggagcgcgtcgttcattgtaaggagcttcccggctttaagtacagacatgactttgttagggatgta 9685182  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaagga 159  Q
    ||||| |||||||| ||  |||||| ||||| | | ||||||||    
T  9685183 cttttcgatatattcagacgggcggaagtattagtgaagaagga 9685226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 33612194 - 33612346
Alignment:
Q  1 tgatgagatgtgttatgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaac 100  Q
    ||||||| ||||| ||||||||||||| |  |||||||||||||||  | |||||   | |||||||||| |||||   | ||||||||||| |  | ||    
T  33612194 tgatgaggtgtgtcatgtttgtcgtaaagtgtgtctggatacttttggggagcatacaactcattgtaaggagcttccagattttaagtacatacatgac 33612293  T
Q  101 tttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaa 153  Q
    ||||| |||||||| |||||||||||||| ||| | |||||||||||| ||||    
T  33612294 tttgtcagggatgttctttttgatatattcaggcgagcgggagtatcagtaaa 33612346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 19161620 - 19161691
Alignment:
Q  185 ccattagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    ||||||||||||||||| ||||| |  ||| |  ||||||||||||| ||||||||||||||||||||||||    
T  19161620 ccattagatagaagatcaacactcaggcatgcggatgttatgatgtaaggatgggtaggaggaaaacatgca 19161691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 256
Target Start/End: Original strand, 18744705 - 18744862
Alignment:
Q  99 actttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaag 198  Q
    |||||||||||||| |||||||||||||||| ||  |||| ||||||||| |||||||| |   || |||||| || |||| | | ||  |||| ||||     
T  18744705 actttgttagggatatactttttgatatattcagacgggcaggagtatcagtaaagaagaaggtgcctgtgaatttcctgactgacccgctagaaagaat 18744804  T
Q  199 atcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    ||| ||||| |  | | |   ||||||| |||||||||||||||||||||||||||||    
T  18744805 atcaacactcaggcctgcgggtgttatggtgtacggatgggtaggaggaaaacatgca 18744862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 13146952 - 13147038
Alignment:
Q  166 tgtgaactttctgaataatccattagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaaca 252  Q
    ||||||||| |||| ||| ||| ||||||||||||||||| |||  |||  | |||||||| |||||| |||||||||| |||||||    
T  13146952 tgtgaacttcctgattaacccactagatagaagatcgacatttaggcatgtagatgttatggtgtacgcatgggtaggaagaaaaca 13147038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 16351608 - 16351666
Alignment:
Q  117 tttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaacttt 175  Q
    ||||||||||||| ||  ||||||||| ||||||||||||  |||||||||||||||||    
T  16351608 tttttgatatattcagacgggcgggagcatcaataaagaaaaaaacgcatgtgaacttt 16351666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 5679633 - 5679558
Alignment:
Q  99 actttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactt 174  Q
    |||||||||||||||| ||||||||||||||||||     | || ||||| | ||||||||| |||||||||||||    
T  5679633 actttgttagggatgttctttttgatatatttaggcataagtgaatatcagtgaagaaggaatcgcatgtgaactt 5679558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 10579621 - 10579687
Alignment:
Q  190 agatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |||| |||||||||||||||  |  ||| |||||||| ||||||  |||||||||||||||||||||    
T  10579621 agatggaagatcgacacttaggccaacaaatgttatggtgtacgagtgggtaggaggaaaacatgca 10579687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 8e-38; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 39435106 - 39434866
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||||||||||| |||||||||||||||  | ||||||   ||||||||||  | |||  ||| ||||||||||    | |||||||||||||||||    
T  39435106 tgtttgtcgtaaggcgtgtctggatacttttggggagcatgccgttcattgtaaagaacttcccggctttaagtacaggcatgactttgttagggatgta 39435007  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacata 215  Q
    |||||||||||||| ||| | |||||||||||| | ||||||||  ||| |||||||||||||| | | ||| |||||||||||||||||||||    |     
T  39435006 ctttttgatatattcaggcgagcgggagtatcagtgaagaaggaggcgcctgtgaactttctgactgacccactagatagaagatcgacacttaggtctg 39434907  T
Q  216 catatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
       |||||||| ||||||||||||| |||||||||||||||    
T  39434906 tcgatgttatggtgtacggatgggttggaggaaaacatgca 39434866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 500666 - 500426
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||| |||||||||| || |||||||||  | |||||||  ||||||||||| ||| |  ||  ||||||||||    | | |||||||||||||||    
T  500666 tgtttgttgtaaggcatgcctagatacttttggggagcatgtcgttcattgtaaggagcatcccgactttaagtacatgcatgattttgttagggatgta 500567  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacata 215  Q
    |||||||||||||| ||    ||| |||||||| | ||||||||| || |||||||||| |||| | | ||| ||||||||||||| ||||| |  | |     
T  500566 ctttttgatatattcagacatgcgagagtatcagtgaagaaggaagcgtatgtgaacttcctgatttacccactagatagaagatcaacactcaggcctg 500467  T
Q  216 catatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |  |||||||| |||| |||||||||| |||||||||||||    
T  500466 cggatgttatgttgtatggatgggtagaaggaaaacatgca 500426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 24125467 - 24125227
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||||||||||| |||||||||||||||  | ||||||   |||||| |||| |||||  ||  |||||||||| |  | |||||||||||||||||    
T  24125467 tgtttgtcgtaaggcgtgtctggatacttttggggagcatgccgttcattttaaggagcttcccgactttaagtacaaacatgactttgttagggatgta 24125368  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacata 215  Q
    |||||||||||||||||  |||| |||| || | | ||| ||||  ||  ||| ||||| |||| | | ||| ||||||||||||| ||||| |  | |     
T  24125367 ctttttgatatatttagacgggcaggagcattagtgaagtaggaggcgtctgtcaacttcctgactgacccactagatagaagatcaacactcaggcctg 24125268  T
Q  216 catatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    ||||||||||| | ||| || |||||||| |||||||||||    
T  24125267 catatgttatggtctactgacgggtaggaagaaaacatgca 24125227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 152 - 256
Target Start/End: Original strand, 25021618 - 25021722
Alignment:
Q  152 aagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaac 251  Q
    ||||||||| |||||||||||||  ||  | | ||| |||||||||||||| ||||||  | | || |||||||| ||||||||||||||||||||||||    
T  25021618 aagaaggaagcgcatgtgaacttcttgtctgacccactagatagaagatcgtcacttaggcctgcagatgttatggtgtacggatgggtaggaggaaaac 25021717  T
Q  252 atgca 256  Q
    |||||    
T  25021718 atgca 25021722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 136 - 256
Target Start/End: Original strand, 35739775 - 35739895
Alignment:
Q  136 ggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacatacatatgttatgatgtacgga 235  Q
    ||||||||||||| | ||||||||   || |||||||||||||| | | ||||| | ||||||||| |||||||  ||| || |||||||| |||| | |    
T  35739775 ggcgggagtatcagtgaagaaggaggtgcctgtgaactttctgactgacccatttggtagaagatcaacacttaggcatgcagatgttatggtgtatgaa 35739874  T
Q  236 tgggtaggaggaaaacatgca 256  Q
    |||||||||||||||||||||    
T  35739875 tgggtaggaggaaaacatgca 35739895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 252
Target Start/End: Original strand, 42921830 - 42922031
Alignment:
Q  51 agcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtactttttgatatatttaggtgggcgggagtatcaat 150  Q
    |||||||  |||||||||||||| || | || |||||||||| |  | |||| ||||||||||| |||||||||||||| ||| ||| || ||||||  |    
T  42921830 agcatgtagttcattgtaagaagtttcttggctttaagtacatacatgacttcgttagggatgttctttttgatatattcaggcgggaggaagtatcggt 42921929  T
Q  151 aaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaa 250  Q
     |||||||| || | | |||||||  ||| | |  || || ||||||||| ||||||||   ||  | |||||||| ||||| |||||||||||||||||    
T  42921930 gaagaaggagacccctatgaacttcttgacttactcactatatagaagattgacacttacgtatgtagatgttatggtgtacagatgggtaggaggaaaa 42922029  T
Q  251 ca 252  Q
    ||    
T  42922030 ca 42922031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 250
Target Start/End: Complemental strand, 37517484 - 37517299
Alignment:
Q  60 ttcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaagga 159  Q
    ||||||||||| |||||  ||  |||||||||| |  | ||||||||||||||||||||||||||||||| ||   ||||| | |||||   ||||||||    
T  37517484 ttcattgtaaggagcttcccgactttaagtacagacatgactttgttagggatgtactttttgatatattcagacaggcggaaatatcagcgaagaagga 37517385  T
Q  160 aacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaa 250  Q
      ||| ||||||||| ||     | ||| ||||||||||||| ||||| |  | | || |||| ||| |||||||||||||||| ||||||    
T  37517384 ggcgcctgtgaacttcct-----acccactagatagaagatcaacactcatgcctgcaaatgtgatggtgtacggatgggtaggtggaaaa 37517299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 38815517 - 38815483
Alignment:
Q  222 ttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    ||||| |||||||||||||||||||||||||||||    
T  38815517 ttatggtgtacggatgggtaggaggaaaacatgca 38815483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 10189981 - 10189744
Alignment:
Q  17 gtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtac 116  Q
    ||||| |||||||  || ||||||||||||| | ||||||   ||||||||||| |||||  ||| |||||||||| |  | ||||||||| | ||||      
T  10189981 gtttgccgtaaggtgtgcctggatacttttaaggagcatgcagttcattgtaaggagcttcacggctttaagtacaaacatgactttgttaagaatgtca 10189882  T
Q  117 tttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacatac 216  Q
    ||||||||||||  | | ||| | |||||||| | ||||||||   |||||||| |||||| | | |  || |||||||||||| || |  |   | | |    
T  10189881 tttttgatatatccaagcgggtgagagtatcagtgaagaaggatgggcatgtgatctttctaactgactcactagatagaagattgaaatatgggcttgc 10189782  T
Q  217 atatgttatgatgtacggatgggtaggaggaaaacatg 254  Q
    | |||||||| | ||||||| |||||||||||||||||    
T  10189781 aaatgttatgttttacggattggtaggaggaaaacatg 10189744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 8e-38; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 34645005 - 34644765
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    |||||||| |||||| |||||||||||||||    |||||||  ||||||||||  |||||  ||  ||||||||||    | ||||| |||||||||||    
T  34645005 tgtttgtcataaggcgtgtctggatacttttggcgagcatgtcgttcattgtaaagagcttcccgactttaagtacaggcatgactttattagggatgta 34644906  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacata 215  Q
    |||||||||||||| ||| |||||||||||||| | ||||||||| ||| |||||||||||||| | | ||| |||||||||||||||||||||   ||     
T  34644905 ctttttgatatattcaggagggcgggagtatcagtgaagaaggaagcgcgtgtgaactttctgactgacccactagatagaagatcgacacttaggtatg 34644806  T
Q  216 catatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |  |||||||| |||| |||||||  |||||||||||||||    
T  34644805 cggatgttatggtgtatggatgggctggaggaaaacatgca 34644765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 22347316 - 22347125
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    |||||||||||||||||| ||||||||||    | |||||||  ||||||||||| |||||  ||| |||||||| | |  |||||||||||||||||||    
T  22347316 tgtttgtcgtaaggcatgcctggatacttaaggggagcatgtcgttcattgtaaggagcttaccggctttaagtatagacataactttgttagggatgta 22347217  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacact 207  Q
    |||||||| || || || ||||||||| ||||| | ||||||||  | | |||||||||||||| | | ||| ||||||||||||| |||||    
T  22347216 ctttttgacattttcagatgggcgggaatatcagtgaagaaggaggcacctgtgaactttctgactgacccactagatagaagatcaacact 22347125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 51 - 256
Target Start/End: Original strand, 4861692 - 4861897
Alignment:
Q  51 agcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtactttttgatatatttaggtgggcgggagtatcaat 150  Q
    ||||||| ||||||||||| || |||||  |||||||||| | |  | ||||||||||| || |||||||||| ||||| | |||| ||| ||||||| |    
T  4861692 agcatgtcattcattgtaataaacttttatgttttaagtatagacatgactttgttaggaatatactttttgacatattcaagtggacggaagtatcagt 4861791  T
Q  151 aaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaa 250  Q
     ||||| ||  ||  |||||||||  ||| | ||| |||| ||||||||||||||||| | | |||| |||||||| |||||||||||||||||| ||||    
T  4861792 gaagaatgaggcgtttgtgaacttcttgattgatctattaaatagaagatcgacacttcagcctacagatgttatggtgtacggatgggtaggagaaaaa 4861891  T
Q  251 catgca 256  Q
    ||||||    
T  4861892 catgca 4861897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 51 - 256
Target Start/End: Original strand, 37931922 - 37932126
Alignment:
Q  51 agcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtactttttgatatatttaggtgggcgggagtatcaat 150  Q
    |||||||  ||||||||||| ||||| |||  |||||||| |  || ||||||||||||||| | ||||||||| |||||||| |||||||||||| | |    
T  37931922 agcatgtcgttcattgtaaggagcttctcgactttaagtatatgtg-aactttgttagggatatcctttttgatgtatttaggcgggcgggagtataagt 37932020  T
Q  151 aaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaa 250  Q
     |||||||| |||| | ||||||||||||   | ||||||||||||| |||||||||||  | | |  ||||||||||||||  ||||  ||||||||||    
T  37932021 gaagaaggagacgcttttgaactttctgaccgacccattagatagaaaatcgacacttaggcctgcggatgttatgatgtacatatggacaggaggaaaa 37932120  T
Q  251 catgca 256  Q
    ||||||    
T  37932121 catgca 37932126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 39 - 255
Target Start/End: Original strand, 28040818 - 28041034
Alignment:
Q  39 atacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtactttttgatatatttaggtgggc 138  Q
    ||||||||| | |||||||  ||||||||||  || ||  ||| |||||||||| |  | |||||||||||||||||| |||||||||||||||  | ||    
T  28040818 atacttttagggagcatgtcgttcattgtaatgagtttcccggatttaagtacatacatgactttgttagggatgtaccttttgatatatttagacgtgc 28040917  T
Q  139 gggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacatacatatgttatgatgtacggatgg 238  Q
    | || ||||| | ||||||||  ||  ||||||||| |||| ||| ||| ||||||||||||| ||||| |  | | || |||||||| ||||| |||||    
T  28040918 gagaatatcagtgaagaaggaggcgtctgtgaacttcctgactaacccactagatagaagatcaacactcaggcctgcagatgttatggtgtacagatgg 28041017  T
Q  239 gtaggaggaaaacatgc 255  Q
    ||||| |||||||||||    
T  28041018 gtaggtggaaaacatgc 28041034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 7794583 - 7794776
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatga-agcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgt 114  Q
    ||||||||||||||| |||||||||||||||  |  |||||||  |||||||||| ||||||||||  |||||||||| |  |   |||| |||||||||    
T  7794583 tgtttgtcgtaaggcgtgtctggatactttttggggagcatgtagttcattgtaaaaagcttttcgactttaagtacaaacatggttttgctagggatgt 7794682  T
Q  115 actttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacactt 208  Q
     |||||||||| ||| ||| |||||||||||||| | |||| |||  |||||| | |||| |||| ||| ||| |||||| ||||| |||||||    
T  7794683 cctttttgataaattcaggcgggcgggagtatcattgaagagggaggcgcatgcgcacttcctgactaacccactagatataagattgacactt 7794776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 38732027 - 38731773
Alignment:
Q  11 tgttatgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttaggg 110  Q
    |||| ||||| ||||||||  || |||||||||||| ||||||||    ||||||||||| ||||| | || |||||||||| || | ||||||||||||    
T  38732027 tgttttgtttttcgtaaggtgtgcctggatacttttgtgaagcatacagttcattgtaaggagcttcttggctttaagtacaaatatgactttgttaggg 38731928  T
Q  111 atg---tactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacact 207  Q
    |||   |  ||||| |||||||||||  || |||||||||| | ||||||||    | | ||||||| || | | | ||| ||||||||||||||| | |    
T  38731927 atgtcatttttttttatatatttaggcaggtgggagtatcagtgaagaaggaggtccctatgaacttccttactgacccactagatagaagatcgatagt 38731828  T
Q  208 taaacatacatatgttatgatgtacggatgggtaggaggaaaacatgcacatgtg 262  Q
    ||||| | || || ||||| ||| ||||||||||||||||||| ||||| |||||    
T  38731827 taaacttgcagatattatggtgtgcggatgggtaggaggaaaatatgcaaatgtg 38731773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 51 - 256
Target Start/End: Original strand, 29169497 - 29169702
Alignment:
Q  51 agcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtactttttgatatatttaggtgggcgggagtatcaat 150  Q
    |||||||  ||||||||||| | ||| |||| |||||||||| |    ||||||| ||||||||| ||||||||||||| ||  ||||  |||||||| |    
T  29169497 agcatgtcgttcattgtaaggaacttctcggctttaagtacagacacgactttgtaagggatgtattttttgatatattcagacgggcatgagtatcagt 29169596  T
Q  151 aaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaa 250  Q
     ||||||||  ||| ||||||||| |||| | | ||  |||| |||||||| ||||| |  | | |  |||||||| ||||||||| |||||||||||||    
T  29169597 gaagaaggaggcgcctgtgaacttcctgactgacccgctagaaagaagatcaacactcaggcctgcggatgttatggtgtacggataggtaggaggaaaa 29169696  T
Q  251 catgca 256  Q
    ||||||    
T  29169697 catgca 29169702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 35387161 - 35387236
Alignment:
Q  192 atagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgcacatgtgaactt 267  Q
    |||||||||| ||| |||| ||| || |||||||||||||| |||| ||| |||| |||||||||  |||||||||    
T  35387161 atagaagatctacagttaagcatgcagatgttatgatgtacagatgtgtaagaggtaaacatgcatgtgtgaactt 35387236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 43831441 - 43831503
Alignment:
Q  192 atagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatg 254  Q
    |||||||||||||| |||  | ||||||||||||| |||||||| |||||| ||||| |||||    
T  43831441 atagaagatcgacatttaggcttacatatgttatggtgtacggacgggtagaaggaatacatg 43831503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 25375672 - 25375741
Alignment:
Q  187 attagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |||||||||||||| ||||||||    | || |||||||| | ||||||||||||| |||||||||||||    
T  25375672 attagatagaagattgacacttaggtctgcagatgttatggtatacggatgggtagaaggaaaacatgca 25375741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 127
Target Start/End: Complemental strand, 19035851 - 19035775
Alignment:
Q  51 agcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtactttttgatata 127  Q
    |||||||  ||||||||||| |||||  ||  |||||||||| |  | | |||||||||||||||||||||||||||    
T  19035851 agcatgtcgttcattgtaaggagcttcccgactttaagtacagacatgaatttgttagggatgtactttttgatata 19035775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 29862230 - 29861985
Alignment:
Q  22 tcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtacttttt 121  Q
    ||||||||| || || |||||||||  | |||||||  ||||||||||| ||||| |  ||||||||||||    | |||||||||||||||||||||||    
T  29862230 tcgtaaggcgtgcctagatacttttggggagcatgtcgttcattgtaaggagcttctgagttttaagtacaggcatgactttgttagggatgtacttttt 29862131  T
Q  122 gatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacatacatatg 221  Q
    |||||||| |||  ||||||||||| | | ||||| ||  | |||||||||||  ||  |   ||| |||||||||||||||||||||  ||| || |||    
T  29862130 gatatattcaggcaggcgggagtattagtgaagaaagaggcacatgtgaacttcttgtctggcccactagatagaagatcgacacttaggcatgcagatg 29862031  T
Q  222 ttatgatgtacggatgggtaggaggaaaacatgcacatgtgaactt 267  Q
    ||||| |||||||||||||||||||||||||||||  |||||||||    
T  29862030 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtgaactt 29861985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 53786147 - 53785908
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||||||||||| || ||||||||||||  | |||||||  ||||||||||| |||||  ||| |||||||||| |    |||||||||||||||||    
T  53786147 tgtttgtcgtaaggcgtgcctggatacttttggggagcatgtcgttcattgtaaggagcttc-cggctttaagtacagacacgactttgttagggatgta 53786049  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacata 215  Q
    |||||||||||||| ||  |||| ||||||||| | ||||||||| ||||||||||||| || | | | ||  |||| | |||||| ||||| |  |||     
T  53786048 ctttttgatatattcagacgggcaggagtatcagtgaagaaggaagcgcatgtgaacttcctaactgacccgctagaaataagatcaacactcaggcatg 53785949  T
Q  216 catatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |  ||||| || |||||||||||||||||||||||||||||    
T  53785948 cggatgttttggtgtacggatgggtaggaggaaaacatgca 53785908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 99 - 256
Target Start/End: Original strand, 39582980 - 39583137
Alignment:
Q  99 actttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaag 198  Q
    ||||||||||||||||| ||||| ||||| |||    ||||||||||||| | ||||||||  || ||||||||||||||| | | ||| ||||||||||    
T  39582980 actttgttagggatgtaattttttatatacttaataaggcgggagtatcagtgaagaaggaggcgtatgtgaactttctgattgacccactagatagaag 39583079  T
Q  199 atcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    |||||||||||  ||| |  |||||||  |||||||||||||||||||||||||||||    
T  39583080 atcgacacttaggcatgcggatgttatagtgtacggatgggtaggaggaaaacatgca 39583137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 36 - 255
Target Start/End: Original strand, 52741199 - 52741418
Alignment:
Q  36 tggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtactttttgatatatttaggtg 135  Q
    |||||||||||  | || ||||  ||||||||||| |||||  ||  |||||||||| |  | ||||||||||||||||| ||||||||||||| ||  |    
T  52741199 tggatacttttggggagtatgtcgttcattgtaaggagcttcccgactttaagtacagacatgactttgttagggatgtaatttttgatatattcagacg 52741298  T
Q  136 ggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacatacatatgttatgatgtacgga 235  Q
    ||||||| ||||| | ||||||||  || |||||||||| |||| | | ||| ||||||||||||| ||||| | || | || ||||| || | ||||||    
T  52741299 ggcgggaatatcagtgaagaaggaggcgtatgtgaacttcctgactgacccactagatagaagatcaacactcagacttgcagatgttgtggtatacgga 52741398  T
Q  236 tgggtaggaggaaaacatgc 255  Q
    |||||||| |||||||||||    
T  52741399 tgggtaggtggaaaacatgc 52741418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 62 - 206
Target Start/End: Complemental strand, 7901243 - 7901101
Alignment:
Q  62 cattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaa 161  Q
    ||||||||  |||||||||| ||||||||||    | || |||||||  ||||||||||||||||||||||| |||||| |||||| || |||||||| |    
T  7901243 cattgtaacgagcttttcggctttaagtacaagcatgaccttgttag--atgtactttttgatatatttaggcgggcggaagtatcgatgaagaaggaga 7901146  T
Q  162 cgcatgtgaactttctgaataatccattagatagaagatcgacac 206  Q
    ||| |||||||||||||| | |  || ||||||||||||| ||||    
T  7901145 cgcctgtgaactttctgactgactcactagatagaagatcaacac 7901101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 171
Target Start/End: Complemental strand, 35236551 - 35236412
Alignment:
Q  32 tgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgtactttttgatatattta 131  Q
    |||||||||||||||| |||||||||| || |||||||| | |||   |  |||||| |||    | ||||||||| ||||||||||||| |||||||||    
T  35236551 tgtctggatacttttaggaagcatgttgtttattgtaaggatcttcctgactttaagcacatgcatgactttgttaaggatgtacttttttatatattta 35236452  T
Q  132 ggtgggcgggagtatcaataaagaaggaaacgcatgtgaa 171  Q
    || |||||||||||| | | ||||||||  ||||||||||    
T  35236451 ggcgggcgggagtatgagtgaagaaggaggcgcatgtgaa 35236412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 49018402 - 49018162
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||||||||| | || ||  ||||||||  | |||||||  ||||||||||||| |||   | ||||||||||| |  | ||||||||||||||||     
T  49018402 tgtttgtcgtaagacgtgcctatatactttttgggagcatgtcgttcattgtaagaaacttcctgattttaagtacatacatgactttgttagggatgtg 49018303  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacata 215  Q
    |||||||||||||| ||  |||| ||||||||  | |||||  |   |   |||||||| |||| | | ||| ||||||||||||  ||||| |  |||     
T  49018302 ctttttgatatattcagacgggcaggagtatcggtgaagaataaggtgtcagtgaacttcctgactgacccactagatagaagattaacactcaggcatg 49018203  T
Q  216 catatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    || |||||||| ||||||||| |||| ||||||||||||||    
T  49018202 cagatgttatggtgtacggattggtacgaggaaaacatgca 49018162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 43123583 - 43123452
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||||||||||||||||| |||||   |  |||||| |  ||||||||||||||||||| |  ||| || ||||    | ||||||||||||||||     
T  43123583 tgtttgtcgtaaggcatgtctagataccactgggaagcaagcaattcattgtaagaagctttccaatttcaaatacatgcatgactttgttagggatgtc 43123484  T
Q  116 ctttttgatatatttaggtgggcgggagtatc 147  Q
    |||||| |||||||||||||| || |||||||    
T  43123483 cttttttatatatttaggtggacgagagtatc 43123452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 52411570 - 52411805
Alignment:
Q  16 tgtttgtcgtaaggcatgtctggatacttttatgaagcatgttattcattgtaagaagcttttcggttttaagtacacatgtaactttgttagggatgta 115  Q
    ||||||||||||||| || ||| ||||||||  | |||||||  ||||||||||| ||||| || | ||||||||   |  | ||||| ||||||||||     
T  52411570 tgtttgtcgtaaggcgtgcctgaatacttttggggagcatgtcgttcattgtaaggagcttctcagctttaagtattgacatgactttattagggatgtc 52411669  T
Q  116 ctttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacacttaaacata 215  Q
    |||||| ||||||| | | || |  |||||||| | |||||||| |||  |||||||||| | | | | ||| |||||||||||| ||| ||||  | |     
T  52411670 ctttttaatatattcaagcggacaagagtatcagtgaagaaggagacgtttgtgaactttttaactgacccactagatagaagattgacgcttaggcctg 52411769  T
Q  216 catatgttatgatgtacggatgggtaggaggaaaac 251  Q
    || |||||||||||| || ||||  |||||||||||    
T  52411770 cagatgttatgatgtccgaatggacaggaggaaaac 52411805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 219 - 254
Target Start/End: Complemental strand, 37992568 - 37992533
Alignment:
Q  219 atgttatgatgtacggatgggtaggaggaaaacatg 254  Q
    ||||||||||||||||||||||||||||||||||||    
T  37992568 atgttatgatgtacggatgggtaggaggaaaacatg 37992533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 38146404 - 38146306
Alignment:
Q  111 atgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaagatcgacactta 209  Q
    |||| ||||||||||||||||||||||| ||||||| | | ||||| ||   || |||||||||||| | | | | | |||||||||||||||||||||    
T  38146404 atgtcctttttgatatatttaggtgggcaggagtataagtgaagaatgaggtgcttgtgaactttctcactgaccaactagatagaagatcgacactta 38146306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 55 - 92
Alignment:
Q  219 atgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55 atgttatgatgtacggatgggtaggaggaaaacatgca 92  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 99 - 256
Target Start/End: Complemental strand, 20077 - 19920
Alignment:
Q  99 actttgttagggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaag 198  Q
    ||||||||||| |||| |||||||||||||| ||| ||| |  ||||||| | ||||||||  |   | |||||||  | | | | ||| ||||||||||    
T  20077 actttgttaggaatgtcctttttgatatattcaggagggtgaaagtatcagtgaagaaggaggcctctctgaacttcttaactgacccactagatagaag 19978  T
Q  199 atcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacatgca 256  Q
    ||  ||||||| || |  | |||||||| ||||||||| |||||||||||||||||||    
T  19977 atgaacacttagacctgtagatgttatggtgtacggataggtaggaggaaaacatgca 19920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 33517 - 33453
Alignment:
Q  189 tagatagaagatcgacacttaaacatacatatgttatgatgtacggatgggtaggaggaaaacat 253  Q
    ||||||||||||| ||||| |  ||| |  |||||||| ||||||||||||||||||||||||||    
T  33517 tagatagaagatcaacactcaggcatgcggatgttatggtgtacggatgggtaggaggaaaacat 33453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 49760 - 49672
Alignment:
Q  109 ggatgtactttttgatatatttaggtgggcgggagtatcaataaagaaggaaacgcatgtgaactttctgaataatccattagatagaa 197  Q
    |||||| ||||||||| |||| || | ||| | ||||||||| |||||||| ||||||||| ||||||| | | | | |||||||||||    
T  49760 ggatgttctttttgatgtattcagattggcagaagtatcaatgaagaaggagacgcatgtgtactttctaactgacctattagatagaa 49672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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