View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4085_low_10 (Length: 327)

Name: NF4085_low_10
Description: NF4085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4085_low_10
NF4085_low_10
[»] chr8 (5 HSPs)
chr8 (14-312)||(5322784-5323081)
chr8 (65-312)||(17798445-17798691)
chr8 (88-172)||(15176885-15176969)
chr8 (93-159)||(27286899-27286966)
chr8 (240-312)||(15987851-15987923)
[»] chr6 (3 HSPs)
chr6 (46-259)||(22795480-22795694)
chr6 (138-312)||(7318264-7318438)
chr6 (66-159)||(9513159-9513252)
[»] chr3 (3 HSPs)
chr3 (66-266)||(22974733-22974933)
chr3 (161-311)||(22243517-22243667)
chr3 (120-161)||(39950949-39950990)
[»] chr2 (2 HSPs)
chr2 (67-311)||(19323106-19323349)
chr2 (93-159)||(19378016-19378083)
[»] chr1 (2 HSPs)
chr1 (66-159)||(19050089-19050182)
chr1 (115-230)||(17895357-17895473)
[»] chr4 (6 HSPs)
chr4 (88-308)||(42586444-42586664)
chr4 (193-309)||(36392301-36392417)
chr4 (66-312)||(9394169-9394415)
chr4 (67-159)||(25105407-25105499)
chr4 (98-159)||(7620734-7620795)
chr4 (70-126)||(17451145-17451202)
[»] chr7 (4 HSPs)
chr7 (65-312)||(14107395-14107642)
chr7 (65-312)||(14417352-14417599)
chr7 (115-228)||(33440271-33440385)
chr7 (98-146)||(8922819-8922867)
[»] chr5 (3 HSPs)
chr5 (89-159)||(17197721-17197791)
chr5 (250-312)||(43247402-43247464)
chr5 (250-312)||(43253867-43253929)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 312
Target Start/End: Original strand, 5322784 - 5323081
Alignment:
Q  14 caatgtgtgttgtggttagtgtaccgacgccatgttctattggatttgtttcgatggtttgcctcgaaagggaaattatagcttgttgttgttttgcaga 113  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |    
T  5322784 caatgtgtgttgcggtttgtgtaccgacgccatgttctattggatttgtttcgatggtttgactcgaaaggaaaattatagcttgttgttgttttgcaaa 5322883  T
Q  114 aagttgatggatcttaaatcgcttttgtgttggcagacgattcatatgccgatttagtttctccattcattatgtttgatttggagtgtgggattcgaaa 213  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5322884 aagtttatggatcttaaatcgcttttgtgttgacagacgattcatacgcc-atttagtttctccattcattatgtttgatttggagtgtgggactcgaaa 5322982  T
Q  214 tggtcgtttagcttgtttccctttgttgcagggagatgatgatacatggactcactttcgtgtcgacggacggtccaatcactgcactgaagacctttg 312  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||  |||||||||    
T  5322983 tggtcgtttagcttgtttccctttgttgcagggagatgatggtacatagactcgctttcgtgtcgacgaacggtacaatcactgcactagagacctttg 5323081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 65 - 312
Target Start/End: Original strand, 17798445 - 17798691
Alignment:
Q  65 cgatggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcatatgccg 164  Q
    |||||||||| |||||||| |  ||||||| ||| | ||||||||||   ||||||||||||||| |||||||||| ||| | ||||||||||||||||     
T  17798445 cgatggtttgactcgaaagagcgattatagtttgcttttgttttgcatggagttgatggatcttagatcgcttttgcgttaggagacgattcatatgcca 17798544  T
Q  165 atttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgtttccctttgttgcagggagatgatgatacatggac 264  Q
     ||||| ||| ||||||| |||| |||| ||||  ||||||  || ||| ||||||||| |||  ||  ||||||||||||||| ||||| ||||| ||     
T  17798545 gtttagattcgccattcactatggttgacttggtttgtggggctcaaaagggtcgtttaactt-attatctttgttgcagggagttgatggtacatagat 17798643  T
Q  265 tcactttcgtgtcgacggacggtccaatcactgcactgaagacctttg 312  Q
     | ||| ||||| |||| ||| |||||||||  || ||||||||||||    
T  17798644 ccgcttccgtgttgacgaacgatccaatcaccacattgaagacctttg 17798691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 15176969 - 15176885
Alignment:
Q  88 attatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcatatgccgatttagtt 172  Q
    |||||| |||| |||| ||||||||  |||||||||||||| |||||||| |||| ||||||| |||| ||| ||| || |||||    
T  15176969 attataacttgctgttattttgcagggagttgatggatcttgaatcgcttatgtgatggcagatgatttataggccaatatagtt 15176885  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 27286899 - 27286966
Alignment:
Q  93 agcttgttgttgtttt-gcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcata 159  Q
    ||||||||| |||||| ||||  |||||||||||||| ||| | || |||||||||||||||||||||    
T  27286899 agcttgttgctgtttttgcagggagttgatggatcttgaattgtttctgtgttggcagacgattcata 27286966  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 15987923 - 15987851
Alignment:
Q  240 tgcagggagatgatgatacatggactcactttcgtgtcgacggacggtccaatcactgcactgaagacctttg 312  Q
    ||||||||| | ||| |||||||||   ||||||||| ||||||||||||| |||| ||| ||| ||||||||    
T  15987923 tgcagggagtttatggtacatggacctgctttcgtgttgacggacggtccactcaccgcaatgatgacctttg 15987851  T

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Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 46 - 259
Target Start/End: Complemental strand, 22795694 - 22795480
Alignment:
Q  46 tgttctattggatttgtttcga-tggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgtt 144  Q
    |||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| || |||||||| | ||||    
T  22795694 tgttctattggatttgtttcaaatggtttgactcgaaagggaaattatagcttgttgtggttttgcaggaagttgatggattttgaatcgcttctatgtt 22795595  T
Q  145 ggcagacgattcatatgccgatttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgtttccctttgttgcag 244  Q
    || ||| ||||||||  |   ||| ||||||||||||| ||||||||||||  | |||| || |||||| |||| ||||||||| |||||||||||| ||    
T  22795594 ggaagatgattcatacacatgttttgtttctccattcaatatgtttgatttaaactgtgagactcgaaagggtcatttagcttgcttccctttgttgtag 22795495  T
Q  245 ggagatgatgataca 259  Q
    |||| ||||| ||||    
T  22795494 ggagttgatggtaca 22795480  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 138 - 312
Target Start/End: Original strand, 7318264 - 7318438
Alignment:
Q  138 ttgtgttggcagacgattcatatgccgatttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgtttcccttt 237  Q
    ||||| ||| ||||||||||||  ||| |||||||| ||||||| |||||||| |||| || ||||| |||||||| |||| ||||||||| | || |||    
T  7318264 ttgtgctggtagacgattcatacaccggtttagtttatccattctttatgtttaatttagattgtggcattcgaaagggtcatttagcttgctgccattt 7318363  T
Q  238 gttgcagggagatgatgatacatggactcactttcgtgtcgacggacggtccaatcactgcactgaagacctttg 312  Q
    |  |||||||| ||||| |||||||||||  |||| ||| ||||||||  || ||||| ||| ||||||||||||    
T  7318364 ggagcagggagttgatggtacatggactcgttttcatgttgacggacgaccctatcacggcattgaagacctttg 7318438  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 9513159 - 9513252
Alignment:
Q  66 gatggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcata 159  Q
    ||||||||| ||||||||||  ||||| ||||| |||||||||||||  |||||||||||| |  |||| |  |||||||||||||||||||||    
T  9513159 gatggtttggctcgaaagggcgattattgcttgctgttgttttgcagggagttgatggatcgtggatcgttcatgtgttggcagacgattcata 9513252  T

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Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 66 - 266
Target Start/End: Original strand, 22974733 - 22974933
Alignment:
Q  66 gatggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcatatgccga 165  Q
    ||||||||| ||||||||| ||||||||||||||||| ||||||||| || ||||| ||| || |||||||||| || ||| |||||||||||| || |     
T  22974733 gatggtttggctcgaaaggaaaattatagcttgttgtggttttgcaggaatttgattgatattgaatcgcttttatgctggaagacgattcatacgctgg 22974832  T
Q  166 tttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgtttccctttgttgcagggagatgatgatacatggact 265  Q
    |||||||| |||||||| |||||||||||| || |||| || |||||| ||| |||||||||| | || |||| ||||||||| | ||| ||||||||||    
T  22974833 tttagtttgtccattcactatgtttgatttagactgtgagactcgaaagggttgtttagcttgctgccttttgctgcagggagtttatggtacatggact 22974932  T
Q  266 c 266  Q
    |    
T  22974933 c 22974933  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 311
Target Start/End: Complemental strand, 22243667 - 22243517
Alignment:
Q  161 gccgatttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgtttccctttgttgcagggagatgatgatacat 260  Q
    |||| ||||||||||||||||| ||||| ||||||||| ||||  |||||||| | |||||||| ||| | ||||||| | || |||| ||||| |||||    
T  22243667 gccggtttagtttctccattcactatgtatgatttggactgtgaaattcgaaaggatcgtttagtttgatgccctttgctacatggagttgatggtacat 22243568  T
Q  261 ggactcactttcgtgtcgacggacggtccaatcactgcactgaagaccttt 311  Q
    |||||| | |  |||| |||||||||||||||||| ||| |||||| ||||    
T  22243567 ggactcccgtcggtgttgacggacggtccaatcaccgcattgaagatcttt 22243517  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 39950990 - 39950949
Alignment:
Q  120 atggatcttaaatcgcttttgtgttggcagacgattcatatg 161  Q
    ||||||||| |||||||||||||||| |||||||||||||||    
T  39950990 atggatcttgaatcgcttttgtgttgacagacgattcatatg 39950949  T

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Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 67 - 311
Target Start/End: Complemental strand, 19323349 - 19323106
Alignment:
Q  67 atggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcatatgc-cga 165  Q
    |||||||| || |||||||| ||| |||||||||| | | ||||||| | ||||||||||||  |||| || |||||||||||| |||||||| ||  |     
T  19323349 atggtttggcttgaaagggagattttagcttgttgctttgttgcagagatttgatggatcttggatcgtttatgtgttggcagatgattcatacgctagt 19323250  T
Q  166 tttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgtttccctttgttgcagggagatgatgatacatggact 265  Q
    || || ||| ||||||||| | ||||||||| | | ||||  | |||| | |||||||||||||| || || |||||| |||| ||||| |||||| ||     
T  19323249 ttaagattcaccattcattttatttgatttgtattatggggcttgaaaggatcgtttagcttgttgccattagttgcatggagttgatg-tacatgaac- 19323152  T
Q  266 cactttcgtgtcgacggacggtccaatcactgcactgaagaccttt 311  Q
    ||||| ||||| ||||||||||||| |||||||| |||||||||||    
T  19323151 cacttccgtgttgacggacggtccagtcactgcattgaagaccttt 19323106  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 19378016 - 19378083
Alignment:
Q  93 agcttgttgttgtttt-gcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcata 159  Q
    ||||||||| |||||| ||||  |||||||||||||| ||| | |||||||||| |||||||||||||    
T  19378016 agcttgttgctgtttttgcagggagttgatggatcttgaattgtttttgtgttgacagacgattcata 19378083  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 19050089 - 19050182
Alignment:
Q  66 gatggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcata 159  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||  |||||  ||||||| |||||||| |||| ||||||| ||||||||    
T  19050089 gatggtttggctcgaaagggaaattatagcttgttgttgtttggcagggagttgcaggatcttgaatcgcttctgtgctggcagatgattcata 19050182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 17895357 - 17895473
Alignment:
Q  115 agttgatggatcttaaatcgcttttgtgttggcagacgattcatatgccgattta-gtttctccattcattatgtttgatttggagtgtgggattcgaaa 213  Q
    |||||||||||||| ||| | |||||| |||| |||||||||||| ||| | ||| | ||| ||||||| | ||||||||||||| |||| |  ||||||    
T  17895357 agttgatggatcttgaattgtttttgtcttggtagacgattcatacgccaacttaagattcgccattcactttgtttgatttggattgtgaggctcgaaa 17895456  T
Q  214 tggtcgtttagcttgtt 230  Q
    | |||||||||||||||    
T  17895457 tagtcgtttagcttgtt 17895473  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 308
Target Start/End: Original strand, 42586444 - 42586664
Alignment:
Q  88 attatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcatatgccgatttagtttctccattcattatg 187  Q
    |||||||||| || |||||||||||  |||||||||||||| ||| |||| ||||||||||||||||||||| |   |||||| ||   |||||| ||||    
T  42586444 attatagcttattattgttttgcagggagttgatggatcttgaatggcttatgtgttggcagacgattcatacggtaatttagatttgtcattcactatg 42586543  T
Q  188 tttgatttggagtgtgggattcgaaatggtcgtttagcttgtttccctttgttgcagggagatgatgatacatggactcactttcgtgtcgacggacggt 287  Q
    ||||| ||  | || |||  |||||| | || |||||||||||  | |||||||||||||| | ||| |||| ||||   |||  |||| || |||||||    
T  42586544 tttgacttaaactgcggggctcgaaaggatcatttagcttgttgtcatttgttgcagggagttaatggtacaaggacctgcttctgtgttgaaggacggt 42586643  T
Q  288 ccaatcactgcactgaagacc 308  Q
    | |||||| ||||||||||||    
T  42586644 ctaatcaccgcactgaagacc 42586664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 309
Target Start/End: Complemental strand, 36392417 - 36392301
Alignment:
Q  193 tttggagtgtgggattcgaaatggtcgtttagcttgtttccctttgttgcagggagatgatgatacatggactcactttcgtgtcgacggacggtccaat 292  Q
    |||||| |||| || |||||| |||||||||||||| | || |||| ||||||||| |||||  ||| |||||||||||||||  ||||||||| || ||    
T  36392417 tttggattgtgtgactcgaaagggtcgtttagcttgctgccatttgctgcagggagttgatggaacaaggactcactttcgtgctgacggacggccctat 36392318  T
Q  293 cactgcactgaagacct 309  Q
    |||  ||||||||||||    
T  36392317 caccacactgaagacct 36392301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 66 - 312
Target Start/End: Complemental strand, 9394415 - 9394169
Alignment:
Q  66 gatggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcatatgccga 165  Q
    ||||||| | |||||||||| |||||||||||||||||||||| |||  |||||| |||||||  || | || |||||||||||||||| |||| |||      
T  9394415 gatggttcggctcgaaagggcaattatagcttgttgttgttttacagggagttgaaggatcttggattgattctgtgttggcagacgatccatacgccag 9394316  T
Q  166 tttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgtttc-cctttgttgcagggagatgatgatacatggac 264  Q
    |||||  || ||| ||  |||| |||  |||||  |||||  || | | |||| ||| ||||| | |   |||||||||||||| ||||| ||||||||     
T  9394315 tttagactcgccactctctatg-ttggcttggacggtggggctcaagagggtcattttgcttgctgctattttgttgcagggagttgatggtacatggat 9394217  T
Q  265 tcactttcgtgtcgacggacggtccaatcactgcactgaagacctttg 312  Q
     ||||| ||||| ||||||||||||||||||  || |||| |||||||    
T  9394216 ccacttccgtgttgacggacggtccaatcaccacaatgaacacctttg 9394169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 25105407 - 25105499
Alignment:
Q  67 atggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcata 159  Q
    |||||||| ||||||||||| |||||| ||| |||||||||| || | ||||||| ||||||  || | |||||||| |||||||||||||||    
T  25105407 atggtttggctcgaaagggagattataacttcttgttgttttacaaagagttgatagatcttggattgtttttgtgtcggcagacgattcata 25105499  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 7620795 - 7620734
Alignment:
Q  98 gttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcata 159  Q
    |||||||||||||||  | |||||||||||| ||| | ||||||||||| ||||||||||||    
T  7620795 gttgttgttttgcagggaattgatggatcttgaattgtttttgtgttggtagacgattcata 7620734  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 17451145 - 17451202
Alignment:
Q  70 gtttgcctcgaaaggga-aattatagcttgttgttgttttgcagaaagttgatggatc 126  Q
    ||||| ||||||||||  |||||||||||| ||||||||||||||  |||||||||||    
T  17451145 gtttggctcgaaaggggcaattatagcttgctgttgttttgcagagggttgatggatc 17451202  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 312
Target Start/End: Original strand, 14107395 - 14107642
Alignment:
Q  65 cgatggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcatatgccg 164  Q
    |||||||||| ||||||||||  ||||||||||| ||||| |||||||  |||||| |||||||  ||||||| ||||||||||||| || ||||  ||     
T  14107395 cgatggtttggctcgaaagggtgattatagcttgctgttgatttgcagggagttgagggatcttggatcgcttatgtgttggcagacaatccatacacca 14107494  T
Q  165 atttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgtttc-cctttgttgcagggagatgatgatacatgga 263  Q
     ||||| ||  ||||||  |||| |||| |||||  |||||  |||||| | ||| || ||||| | |   ||||| |||||||| ||||| ||||||||    
T  14107495 ttttagatttgccattctctatg-ttgacttggacagtggggctcgaaaggttcgatttgcttgctgctattttgtagcagggagttgatggtacatgga 14107593  T
Q  264 ctcactttcgtgtcgacggacggtccaatcactgcactgaagacctttg 312  Q
      | ||| ||| | |||||||||||||||||| ||| |||| |||||||    
T  14107594 tccgcttccgtattgacggacggtccaatcaccgcaatgaacacctttg 14107642  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 312
Target Start/End: Original strand, 14417352 - 14417599
Alignment:
Q  65 cgatggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcatatgccg 164  Q
    |||||||||| ||||||||||  ||||||||||| ||||| |||||||  |||||| |||||||  ||||||| ||||||||||||| || ||||  ||     
T  14417352 cgatggtttggctcgaaagggtgattatagcttgctgttgatttgcagggagttgagggatcttggatcgcttatgtgttggcagacaatccatacacca 14417451  T
Q  165 atttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgtttc-cctttgttgcagggagatgatgatacatgga 263  Q
     ||||| ||  ||||||  |||| |||| |||||  |||||  |||||| | ||| || ||||| | |   ||||| |||||||| ||||| ||||||||    
T  14417452 ttttagatttgccattctctatg-ttgacttggacagtggggctcgaaaggttcgatttgcttgctgctattttgtagcagggagttgatggtacatgga 14417550  T
Q  264 ctcactttcgtgtcgacggacggtccaatcactgcactgaagacctttg 312  Q
      | ||| ||| | |||||||||||||||||| ||| |||| |||||||    
T  14417551 tccgcttccgtattgacggacggtccaatcaccgcaatgaacacctttg 14417599  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 228
Target Start/End: Original strand, 33440271 - 33440385
Alignment:
Q  115 agttgatggatcttaaatcgcttttgtgttggcagacgattcatatgcc-gatttagtttctccattcattatgtttgatttggagtgtgggattcgaaa 213  Q
    |||||||||||||| | | | || ||||||||| ||||||||||| ||| | || || ||||||||||| | ||| ||||||||| |||| |  ||||||    
T  33440271 agttgatggatcttgacttgtttctgtgttggcggacgattcatacgccagcttaagattctccattcactttgtgtgatttggattgtgcggctcgaaa 33440370  T
Q  214 tggtcgtttagcttg 228  Q
     ||||||||| ||||    
T  33440371 gggtcgtttaacttg 33440385  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 8922819 - 8922867
Alignment:
Q  98 gttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttgg 146  Q
    |||||||||||||||  |||||||||||||| ||| | |||||||||||    
T  8922819 gttgttgttttgcagggagttgatggatcttgaattgtttttgtgttgg 8922867  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 17197791 - 17197721
Alignment:
Q  89 ttatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcata 159  Q
    ||||||||||||||||||||||||  ||||||||||||||  || | || | |||||||||||||||||||    
T  17197791 ttatagcttgttgttgttttgcagggagttgatggatcttggattgtttctatgttggcagacgattcata 17197721  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 43247464 - 43247402
Alignment:
Q  250 tgatgatacatggactcactttcgtgtcgacggacggtccaatcactgcactgaagacctttg 312  Q
    ||||| |||||||||   ||||||||| |||||||||||||||||| ||||  ||||||||||    
T  43247464 tgatggtacatggacctgctttcgtgttgacggacggtccaatcaccgcacataagacctttg 43247402  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 43253929 - 43253867
Alignment:
Q  250 tgatgatacatggactcactttcgtgtcgacggacggtccaatcactgcactgaagacctttg 312  Q
    ||||| |||||||||   ||||||||| |||||||||||||||||| ||||  ||||||||||    
T  43253929 tgatggtacatggacctgctttcgtgttgacggacggtccaatcaccgcacataagacctttg 43253867  T

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