View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4085_low_16 (Length: 236)

Name: NF4085_low_16
Description: NF4085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4085_low_16
NF4085_low_16
[»] chr2 (4 HSPs)
chr2 (1-221)||(3220402-3220622)
chr2 (9-197)||(12504840-12505032)
chr2 (9-197)||(14680894-14681086)
chr2 (20-197)||(39587451-39587646)
[»] chr1 (4 HSPs)
chr1 (1-201)||(52887814-52888022)
chr1 (7-196)||(29887071-29887263)
chr1 (9-197)||(52608987-52609179)
chr1 (63-167)||(13728701-13728805)
[»] chr7 (7 HSPs)
chr7 (1-197)||(3718203-3718403)
chr7 (1-197)||(42105257-42105457)
chr7 (9-197)||(48513409-48513601)
chr7 (1-197)||(48727851-48728051)
chr7 (69-121)||(34529808-34529860)
chr7 (69-121)||(45574882-45574934)
chr7 (72-121)||(17990443-17990492)
[»] scaffold0014 (2 HSPs)
scaffold0014 (9-197)||(173633-173825)
scaffold0014 (1-197)||(143831-144031)
[»] chr8 (3 HSPs)
chr8 (9-197)||(44198017-44198209)
chr8 (9-197)||(20793559-20793751)
chr8 (9-197)||(23928942-23929134)
[»] chr6 (1 HSPs)
chr6 (9-197)||(29651894-29652086)
[»] chr5 (5 HSPs)
chr5 (9-197)||(36678940-36679132)
chr5 (9-197)||(36662646-36662838)
chr5 (1-197)||(43560259-43560465)
chr5 (1-167)||(23203822-23203988)
chr5 (166-197)||(23198685-23198716)
[»] chr3 (4 HSPs)
chr3 (9-197)||(38327668-38327860)
chr3 (1-197)||(46073464-46073662)
chr3 (1-197)||(55488756-55488956)
chr3 (69-121)||(35029014-35029066)
[»] scaffold1284 (1 HSPs)
scaffold1284 (1-197)||(203-409)
[»] chr4 (1 HSPs)
chr4 (6-121)||(56288593-56288708)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3220402 - 3220622
Alignment:
Q  1 cacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220402 cacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctg 3220501  T
Q  101 cacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgtggtttgggatgagattcatagttactgcttcatgc 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220502 cacctggattctttcaacgatttagccttcgctgctttcgcgattcgttctccttcgccactcgtggtttgggatgagattcatagttactgcttcatgc 3220601  T
Q  201 aaagcaaagaatcttgctctt 221  Q
    |||||||||| ||||||||||    
T  3220602 aaagcaaagattcttgctctt 3220622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 12504840 - 12505032
Alignment:
Q  9 attccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctgga 108  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12504840 attccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctgga 12504939  T
Q  109 ttctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 197  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  12504940 ttctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 12505032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 14681086 - 14680894
Alignment:
Q  9 attccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctgga 108  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14681086 attccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctgga 14680987  T
Q  109 ttctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 197  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  14680986 ttctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 14680894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 39587451 - 39587646
Alignment:
Q  20 ttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaag--------------aacaagattctttgctctgcacct 105  Q
    |||||||||||||| |||||||||||| |||||| |||| | ||||||||||||||||||||              |||||||||| |||||||||||||    
T  39587451 ttatctcacagatgcagcgcgcgaagctggaacggagaatcttgcttacactgaatgggaagaacaagattcgaagaacaagattcattgctctgcacct 39587550  T
Q  106 ggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccact----cgtggtttgggatgagattcatagttactgcttca 197  Q
    |||||||||||||||||| |||||| || |||||||||||||||||| |||||||||       ||||||||||||||| |||| |||||||||||    
T  39587551 ggattctttcaacgatttcgccttcgctactttcgcgattcgttctcattcgccacttagggcaggtttgggatgagatccataattactgcttca 39587646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 52887814 - 52888022
Alignment:
Q  1 cacctcagattccaccggtttatctcacagatgaagcgcgcg----aagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgc 96  Q
    ||||| |||||||||||||||||||||||| || ||||||||    ||||||||||| |||| |||||||||||||||||||||||||||||||| ||||    
T  52887814 cacctgagattccaccggtttatctcacagttgcagcgcgcgcacgaagcaggaacggagaatcctgcttacactgaatgggaagaacaagattcattgc 52887913  T
Q  97 tctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactg 192  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    ||||||||||||||| |||||||||||    
T  52887914 tctgcacctggattctttcaacgatttcgccttcactactttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagatccatagttactg 52888013  T
Q  193 cttcatgca 201  Q
    |||||||||    
T  52888014 cttcatgca 52888022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 29887071 - 29887263
Alignment:
Q  7 agattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctg 106  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  29887071 agattccaccggtttatctcaca-atgcagcgcgcgaagcaggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctg 29887169  T
Q  107 gattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttc 196  Q
    |||||||||||||||||  ||||| || |||||||||||||||||||||||||||||||    ||||||||||||||| |||||||||||||||    
T  29887170 gattctttcaacgatttcaccttcgctactttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagatccatagttactgcttc 29887263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 52609179 - 52608987
Alignment:
Q  9 attccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctgga 108  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52609179 attccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctgga 52609080  T
Q  109 ttctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 197  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  52609079 ttctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 52608987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 13728701 - 13728805
Alignment:
Q  63 gcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccact 162  Q
    |||||||| ||||||||||||||||||||| | || ||||| |||||| | ||||| |||| | |||| ||||||||||| ||||| || || || ||||    
T  13728701 gcttacaccgaatgggaagaacaagattctctcctttgcacatggattttatcaactatttcgtcttctctgctttcgcgtttcgtgcttctccgtcact 13728800  T
Q  163 cgtgg 167  Q
    |||||    
T  13728801 cgtgg 13728805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 3718403 - 3718203
Alignment:
Q  1 cacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctg 100  Q
    ||||| ||||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||    
T  3718403 cacctgagattccaccggtttatctcacagatgcagcacgcgaagctggaacgaagaatcctgcttacaccgaatgggaagaacaagattcattgctctg 3718304  T
Q  101 cacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttc 196  Q
    ||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||    ||||||||||||||| || ||||||||||||    
T  3718303 cacctggattctttcaacgattttgccttcgctactttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagatccacagttactgcttc 3718204  T
Q  197 a 197  Q
    |    
T  3718203 a 3718203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 42105257 - 42105457
Alignment:
Q  1 cacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctg 100  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||| |||||  |||| |||||||||||||||||||||||||||||||| ||||||||    
T  42105257 cacctgagattccaccggtttatctcacagatgcagcgcgcgaagctggaaccgagaatcctgcttacactgaatgggaagaacaagattcattgctctg 42105356  T
Q  101 cacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttc 196  Q
    ||||||||||||||||||||||| |||||  || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||||||||||||||    
T  42105357 cacctggattctttcaacgatttcgccttggctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttc 42105456  T
Q  197 a 197  Q
    |    
T  42105457 a 42105457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 48513601 - 48513409
Alignment:
Q  9 attccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctgga 108  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48513601 attccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctgga 48513502  T
Q  109 ttctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 197  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  48513501 ttctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 48513409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 48728051 - 48727851
Alignment:
Q  1 cacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctg 100  Q
    ||||| ||||||||||||||||||||||| ||| ||||||| |||| |||||| |||| |||||||||||| ||||||||||||||||||| ||||||||    
T  48728051 cacctgagattccaccggtttatctcacacatgcagcgcgcaaagctggaacggagaatcctgcttacactaaatgggaagaacaagattcattgctctg 48727952  T
Q  101 cacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttc 196  Q
    ||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||||||||||||||    
T  48727951 cacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttc 48727852  T
Q  197 a 197  Q
    |    
T  48727851 a 48727851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 34529860 - 34529808
Alignment:
Q  69 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 121  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  34529860 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 34529808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 45574934 - 45574882
Alignment:
Q  69 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 121  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  45574934 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 45574882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 17990443 - 17990492
Alignment:
Q  72 gaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 121  Q
    ||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  17990443 gaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 17990492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 173633 - 173825
Alignment:
Q  9 attccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctgga 108  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  173633 attccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctgga 173732  T
Q  109 ttctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 197  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  173733 ttctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 173825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 143831 - 144031
Alignment:
Q  1 cacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctg 100  Q
    ||||| |||||||| |||||||||||||||||| |||| ||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||| |    
T  143831 cacctgagattccatcggtttatctcacagatgcagcgtgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctcag 143930  T
Q  101 cacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttc 196  Q
    ||||||||||||||||||||| | |||||| || |||||||| ||||||||||||| |||||| |    ||||||||||||||| |||||||||||||||    
T  143931 cacctggattctttcaacgatctcgccttcgctactttcgcggttcgttctccttctccactcttggcaggtttgggatgagatccatagttactgcttc 144030  T
Q  197 a 197  Q
    |    
T  144031 a 144031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 44198017 - 44198209
Alignment:
Q  9 attccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctgga 108  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44198017 attccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctgga 44198116  T
Q  109 ttctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 197  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  44198117 ttctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 44198209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 20793559 - 20793751
Alignment:
Q  9 attccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctgga 108  Q
    ||||||| ||||||||||||||||| |||||||||||| |||||| |||| | |||||||||||||||||||||||||||||| ||||||||||||||||    
T  20793559 attccacaggtttatctcacagatgcagcgcgcgaagctggaacggagaatcatgcttacactgaatgggaagaacaagattcattgctctgcacctgga 20793658  T
Q  109 ttctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 197  Q
    ||||||||||||| | |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  20793659 ttctttcaacgatatcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 20793751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 23929134 - 23928942
Alignment:
Q  9 attccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctgga 108  Q
    ||||||| | ||||||||||||||| |||||||||||| |||||| | || |||||||||||||||||||||||||||||||| |||||||||||||| |    
T  23929134 attccactgatttatctcacagatgcagcgcgcgaagctggaacggataatcctgcttacactgaatgggaagaacaagattcattgctctgcacctgaa 23929035  T
Q  109 ttctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 197  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  23929034 ttctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 23928942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 29651894 - 29652086
Alignment:
Q  9 attccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctgga 108  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29651894 attccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctgga 29651993  T
Q  109 ttctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 197  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  29651994 ttctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 29652086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 36679132 - 36678940
Alignment:
Q  9 attccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctgga 108  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36679132 attccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctgga 36679033  T
Q  109 ttctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 197  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  36679032 ttctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 36678940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 36662646 - 36662838
Alignment:
Q  9 attccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctgga 108  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36662646 attccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctgga 36662745  T
Q  109 ttctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 197  Q
    ||||||||||||||| | |||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  36662746 ttctttcaacgatttcggcttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 36662838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 43560259 - 43560465
Alignment:
Q  1 cacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaaga------acaagattcttt 94  Q
    ||||| ||||||||||||||||||||||||||| ||| | ||||||||||||| |||| |||||||||||||||| ||||||      ||||||||| ||    
T  43560259 cacctgagattccaccggtttatctcacagatgcagcacacgaagcaggaacggagaatcctgcttacactgaattggaagaacaagaacaagattcatt 43560358  T
Q  95 gctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttac 190  Q
    ||||||||||||||||||||||| ||||| |||||| || |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  43560359 gctctgcacctggattctttcaatgatttcgccttcgctactttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagattcatagttac 43560458  T
Q  191 tgcttca 197  Q
    | |||||    
T  43560459 tccttca 43560465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 23203988 - 23203822
Alignment:
Q  1 cacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctg 100  Q
    ||||| ||||||||||||||||||||| | ||| ||| || | |||||||||| |||| |||| ||||||||||||||||||||| ||||  |||||||     
T  23203988 cacctgagattccaccggtttatctcataaatgcagcacgtggagcaggaacggagaatcctgtttacactgaatgggaagaacacgattaattgctcta 23203889  T
Q  101 cacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgtgg 167  Q
    ||||||||||||||||||||||| |||||  || |||||||||||||||||||||||||||||||||    
T  23203888 cacctggattctttcaacgatttcgcctttgctactttcgcgattcgttctccttcgccactcgtgg 23203822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 197
Target Start/End: Complemental strand, 23198716 - 23198685
Alignment:
Q  166 ggtttgggatgagattcatagttactgcttca 197  Q
    ||||||||||||||||||||||||||||||||    
T  23198716 ggtttgggatgagattcatagttactgcttca 23198685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 38327860 - 38327668
Alignment:
Q  9 attccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctgga 108  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38327860 attccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctgga 38327761  T
Q  109 ttctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 197  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  38327760 ttctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 38327668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 46073464 - 46073662
Alignment:
Q  1 cacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctg 100  Q
    ||||| ||||||||  ||||||||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||    
T  46073464 cacctgagattcca--ggtttatctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaagattcattgctctg 46073561  T
Q  101 cacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgtgg----tttgggatgagattcatagttactgcttc 196  Q
    ||||||||||||||||||||||| |||||| || ||||||||||||||||||||| ||||||| |||    ||||||||||||| |||||||||||||||    
T  46073562 cacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctcctttgccactcatggcagatttgggatgagatccatagttactgcttc 46073661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 55488756 - 55488956
Alignment:
Q  1 cacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctg 100  Q
    ||||| ||||||||||||||||||||||||||| ||| |||||||| |||||| ||||  ||||||||||||||||||||||||||||||| ||||||||    
T  55488756 cacctgagattccaccggtttatctcacagatgcagcacgcgaagctggaacggagaattctgcttacactgaatgggaagaacaagattcattgctctg 55488855  T
Q  101 cacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgtggt----ttgggatgagattcatagttactgcttc 196  Q
    ||||||| ||||||||||||||| |||||| || |||||||| ||||||||||||||||||||||||     |||||||||||| || ||||||||||||    
T  55488856 cacctgggttctttcaacgatttcgccttcgctactttcgcggttcgttctccttcgccactcgtggcaggcttgggatgagatccacagttactgcttc 55488955  T
Q  197 a 197  Q
    |    
T  55488956 a 55488956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 35029066 - 35029014
Alignment:
Q  69 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 121  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  35029066 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 35029014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold1284
Description:

Target: scaffold1284; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 203 - 409
Alignment:
Q  1 cacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaaga------acaagattcttt 94  Q
    ||||| ||||||||||||||||||||||||||| ||| | ||||||||||||| |||| |||||||||||||||| ||||||      ||||||||| ||    
T  203 cacctgagattccaccggtttatctcacagatgcagcacacgaagcaggaacggagaatcctgcttacactgaattggaagaacaagaacaagattcatt 302  T
Q  95 gctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttac 190  Q
    ||||||||||||||||||||||| ||||| |||||| || |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  303 gctctgcacctggattctttcaatgatttcgccttcgctactttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagattcatagttac 402  T
Q  191 tgcttca 197  Q
    | |||||    
T  403 tccttca 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 56288708 - 56288593
Alignment:
Q  6 cagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacct 105  Q
    |||||||||||||| |||||||| || |  || ||||  || |||||| |||| || || || || ||||||||||||||||||||| |||| || || |    
T  56288708 cagattccaccggtgtatctcaccgacgctgctcgcgccgccggaacggagaatccggcgtataccgaatgggaagaacaagattctctgctgtgtacat 56288609  T
Q  106 ggattctttcaacgat 121  Q
    ||||||| || |||||    
T  56288608 ggattctctccacgat 56288593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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