View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4085_low_18 (Length: 205)

Name: NF4085_low_18
Description: NF4085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4085_low_18
NF4085_low_18
[»] chr6 (13 HSPs)
chr6 (97-197)||(27228335-27228434)
chr6 (1-50)||(27228478-27228527)
chr6 (9-50)||(27594029-27594070)
chr6 (6-50)||(27532569-27532613)
chr6 (1-50)||(26634738-26634787)
chr6 (1-50)||(26740704-26740753)
chr6 (1-50)||(27583302-27583351)
chr6 (1-50)||(27700508-27700557)
chr6 (7-48)||(28780780-28780821)
chr6 (1-49)||(27312496-27312544)
chr6 (6-50)||(27699249-27699293)
chr6 (6-50)||(27719499-27719543)
chr6 (6-50)||(27725719-27725763)
[»] scaffold0277 (2 HSPs)
scaffold0277 (7-50)||(5622-5665)
scaffold0277 (7-48)||(14137-14178)
[»] scaffold0349 (2 HSPs)
scaffold0349 (6-50)||(4295-4339)
scaffold0349 (6-50)||(8921-8965)


Alignment Details
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 27228434 - 27228335
Alignment:
Q  97 cttcagtatgaatggagagagacatataatgtgattgattggacctacaaaatcatatagcttaataacagtgaataaagggataagaaaaaagtgatga 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27228434 cttcagtatgaatggagagagacatataatgtgattgattggacctacaaaatcatatagcttaataacagtgaataaagggataa-aaaaaagtgatga 27228336  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 27228527 - 27228478
Alignment:
Q  1 ttcctacatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27228527 ttcctacatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 27228478  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 27594029 - 27594070
Alignment:
Q  9 tcctccttccatgtaatttctttaaagtaatgtgaatgtctt 50  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  27594029 tccttcttccatgtaatttctttaaagcaatgtgaatgtctt 27594070  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 27532569 - 27532613
Alignment:
Q  6 acatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 50  Q
    ||||||| |||||||||||||||||||||| || |||||||||||    
T  27532569 acatccttcttccatgtaatttctttaaagcaacgtgaatgtctt 27532613  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 26634787 - 26634738
Alignment:
Q  1 ttcctacatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 50  Q
    ||||||||| ||||| |||||| |||||| ||||| ||||||||||||||    
T  26634787 ttcctacattctcctaccatgtcatttctataaagcaatgtgaatgtctt 26634738  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 26740753 - 26740704
Alignment:
Q  1 ttcctacatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 50  Q
    ||||||||| ||||| |||||| |||||| ||||| ||||||||||||||    
T  26740753 ttcctacattctcctaccatgtcatttctataaagcaatgtgaatgtctt 26740704  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27583302 - 27583351
Alignment:
Q  1 ttcctacatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 50  Q
    ||||||||||||||| ||||||||||||  ||||| ||||| ||||||||    
T  27583302 ttcctacatcctcctgccatgtaatttccataaagcaatgtaaatgtctt 27583351  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27700508 - 27700557
Alignment:
Q  1 ttcctacatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 50  Q
    ||||||||||||||| ||||||||||||  ||||| ||||| ||||||||    
T  27700508 ttcctacatcctcctgccatgtaatttccataaagcaatgtaaatgtctt 27700557  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 28780821 - 28780780
Alignment:
Q  7 catcctccttccatgtaatttctttaaagtaatgtgaatgtc 48  Q
    |||||| |||||||||||||||||||||| ||| ||||||||    
T  28780821 catccttcttccatgtaatttctttaaagcaatatgaatgtc 28780780  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27312496 - 27312544
Alignment:
Q  1 ttcctacatcctccttccatgtaatttctttaaagtaatgtgaatgtct 49  Q
    ||||||||||||||| ||||||||||||  ||||| ||||| |||||||    
T  27312496 ttcctacatcctcctgccatgtaatttccataaagcaatgtaaatgtct 27312544  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 27699249 - 27699293
Alignment:
Q  6 acatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 50  Q
    ||||||| ||||||||||||||||||| || ||||| ||||||||    
T  27699249 acatccttcttccatgtaatttctttagagcaatgtcaatgtctt 27699293  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 27719499 - 27719543
Alignment:
Q  6 acatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 50  Q
    ||||||| ||||||||||||||| |||||| ||||| ||||||||    
T  27719499 acatccttcttccatgtaatttcgttaaagcaatgtcaatgtctt 27719543  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 27725719 - 27725763
Alignment:
Q  6 acatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 50  Q
    ||||||| ||||||||||||||||||| || ||||| ||||||||    
T  27725719 acatccttcttccatgtaatttctttagagcaatgtcaatgtctt 27725763  T

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Target: scaffold0277 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 5622 - 5665
Alignment:
Q  7 catcctccttccatgtaatttctttaaagtaatgtgaatgtctt 50  Q
    |||||| |||||||||||||||||||||| ||||| ||||||||    
T  5622 catccttcttccatgtaatttctttaaagcaatgtcaatgtctt 5665  T

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Target: scaffold0277; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 14137 - 14178
Alignment:
Q  7 catcctccttccatgtaatttctttaaagtaatgtgaatgtc 48  Q
    |||||| |||||||||||||||||||||| ||| ||||||||    
T  14137 catccttcttccatgtaatttctttaaagcaatatgaatgtc 14178  T

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Target: scaffold0349 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 4295 - 4339
Alignment:
Q  6 acatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 50  Q
    ||||||| ||||||||||||||||||| || ||||| ||||||||    
T  4295 acatccttcttccatgtaatttctttagagcaatgtcaatgtctt 4339  T

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Target: scaffold0349; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 8921 - 8965
Alignment:
Q  6 acatcctccttccatgtaatttctttaaagtaatgtgaatgtctt 50  Q
    ||||||| ||||||||||||||| |||||| ||||| ||||||||    
T  8921 acatccttcttccatgtaatttcgttaaagcaatgtcaatgtctt 8965  T

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