View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4085_low_2 (Length: 576)
Name: NF4085_low_2
Description: NF4085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4085_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 51 - 566
Target Start/End: Original strand, 38304375 - 38304890
Alignment:
| Q |
51 |
ctttcctcacaccttgtcaatgcttacgttaactttggttcccaccattacgcttttctctccttctctctactcccccacagatccaaccttgcttgga |
150 |
Q |
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| T |
38304375 |
ctttgctcacaccttgtcaatgcttacgttaactttggttcccaccattacgcttttctcttcttctctcaactcccccacaaatccaaccttgcttgga |
38304474 |
T |
|
| Q |
151 |
acgcaattctcagagctcttattggctctaacaacttcactctttccattcagttttatcactttatgcttagacatggttttgcaccagataattacac |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38304475 |
acgcaattctcagagctcttattggctctaacaacttcactctttccattcagttttatcactctatgcttagacatggttttgcaccagataattacac |
38304574 |
T |
|
| Q |
251 |
atacccacttgtgctaaaagcttgttcttcgttgcaagctattgaaattggaagatgggtttatcataatattctgattaatgaggaaaaggctaatctt |
350 |
Q |
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| T |
38304575 |
atacccacttgtgctaaaagcttgttcttcgttgcaagctattgaaattggaagatgggtttatcataatattctgattaatgaggaaaaggctaatctt |
38304674 |
T |
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| Q |
351 |
tttgtccagtgtgctttgattgatatgtttgtaaaatgtgaaagtttggaagatgcgcgtaaggtgtttgatgaaatgaatgttagagatttggcgactt |
450 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38304675 |
tttgtccagtgtgctttgattgatatgtttgtaaaatgtgaaagtttggaagatgcgcgtaaggtgtttgatgaaatgaatgtgagagatttggcgactt |
38304774 |
T |
|
| Q |
451 |
ggactgcgttgatttgtgggaatgtgtggaatggtgaatgggatgaagcggttttgttgtttaggaagatgagattggaaggtttgaaggctgattcggt |
550 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38304775 |
ggactgcgttgatttgtgggaatgtgtggaatggtgaatgggatgaagcggttttgttgtttaggaagatgagattggaaggtttgaaggctgattcggt |
38304874 |
T |
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| Q |
551 |
tattgtggcgtctgtg |
566 |
Q |
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|||||||||||||||| |
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| T |
38304875 |
tattgtggcgtctgtg |
38304890 |
T |
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