View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4085_low_3 (Length: 473)
Name: NF4085_low_3
Description: NF4085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4085_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Complemental strand, 3546829 - 3546398
Alignment:
| Q |
18 |
caagacagacatgatgctgctaaagagattgagaagagtttgttggaacttcatcaaatatttttggatatggctgtgatggttgaagcacaaggtgaga |
117 |
Q |
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| T |
3546829 |
caagacagacatgatgctgctaaagagattgagaagagtttgttggaacttcatcaaatatttttggatatggctgttatggttgaagcacaaggtgaga |
3546730 |
T |
|
| Q |
118 |
aaatggatgatattgaacatcatgttcttcatgcttctcattatgttaaagatggtacaaagaatcttcacggtgctaaacagtatcagaaaagtagcag |
217 |
Q |
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| T |
3546729 |
aaatggatgatattgaacatcatgttcttcatgcttctcattatgttaaagatggtacaaagaatcttcacggtgctaaacagtatcaaaaaagtagcag |
3546630 |
T |
|
| Q |
218 |
gaagtggatgtgcattgggattatactcttgcttattctggttctcatcattgttattcccattgtcactagtttcagcagttcttgaaatccttctttt |
317 |
Q |
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| T |
3546629 |
gaagtggatgtgcattgggattatactcttgcttattctggttctcatcattgttattcccattgtcactagtttcagcagttcttgaaatccttctttt |
3546530 |
T |
|
| Q |
318 |
atctgtaatatgaagaatacaatatctgatgtattgattcttttactatgttctagtttttgtatctttgttgagttgtgtacgactcatcgtcgtttga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3546529 |
atctgtaatatgaagaatacaatatctgatgtattgattcttttactatgttctagtttttgtatctttgttgagttgtgtacgactcatcgtcgtttga |
3546430 |
T |
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| Q |
418 |
atttccttatgatatcatatattgtgcttaaa |
449 |
Q |
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| T |
3546429 |
attgccttatgatatcatatattgtgcttaaa |
3546398 |
T |
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