View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4085_low_4 (Length: 419)
Name: NF4085_low_4
Description: NF4085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4085_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 14 - 405
Target Start/End: Original strand, 42673306 - 42673697
Alignment:
| Q |
14 |
gaacaaaaaagaagagtaggtcagcgtcagttggtagagaagctggtttcgcgaaacagaaggtaattaatgtgcatgaagaagatgaagaagaaagaat |
113 |
Q |
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| T |
42673306 |
gaacaaaaaagaagagtaggtcagcgtcagttggtagagaagctggtttcgcgaaacagaaggtaattaatgtgcatgaagaagatgaagaagaaagaat |
42673405 |
T |
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| Q |
114 |
gacaacatcaaatgaaattgaacgcaacaaatttatatttaaaagatacaatattgaagaaattgaagttgcaacaaattactttgatatggatggcaaa |
213 |
Q |
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| T |
42673406 |
gacaacatcaaatgaaattgaacgcaacaaatttatatttaaaagatacaatattgaagaaattgaagttgcaacaaattactttgatatggatggcaaa |
42673505 |
T |
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| Q |
214 |
attggtgaaggtggatatggacctgttttcaaaggagtacttgacaacactgatgttgcagttaaagccttaagaccagatatgactcaaggggagaaac |
313 |
Q |
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| T |
42673506 |
attggtgaaggtggatatggacctgttttcaaaggagtacttgacaacactgatgttgcagttaaagccttaagaccagatatgactcaaggggagaaac |
42673605 |
T |
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| Q |
314 |
aatttaatcaagaggtaaccgcannnnnnnnnnnnggaagatacaagtagcatgaatattatagtttcttcaaagtttcataaccttaatga |
405 |
Q |
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| T |
42673606 |
aatttaatcaagaggtaacaacattttttgtttttggaagatacaagtagcatgaatattatagtttcttcaaagtttcataaccttaatga |
42673697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 6516070 - 6516163
Alignment:
| Q |
164 |
atattgaagaaattgaagttgcaacaaattactttgatatggatggcaaaattggtgaaggtggatatggacctgttttcaaaggagtacttga |
257 |
Q |
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| T |
6516070 |
atattaaagaaattcaagttgcaactaatggctttgacaatgctctcaaaattggtgaaggggggtatggacctgtttttaaaggtgtgcttga |
6516163 |
T |
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