View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4085_low_5 (Length: 405)
Name: NF4085_low_5
Description: NF4085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4085_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 40467409 - 40467131
Alignment:
| Q |
20 |
ataaacaagtcaacctaaatgaaagatacctatagtttagtagctagtttccattcctttaggattttaggatttgacaattttttcaagcaagaacgaa |
119 |
Q |
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| T |
40467409 |
ataaacaagtcaacctaaatgaaagatacctatagtttagtagctagtttccattcctttaggattttaggatttgacaattttttcaagcaagaacgaa |
40467310 |
T |
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| Q |
120 |
caatatgggtggaacaagatagggtttcacgagctcatcacatacagtacgttccaaagtgtgtgacaaaagtttcaagactagctatgggtggatcacg |
219 |
Q |
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| T |
40467309 |
caatatgggtggaacaagatagggtttcacgagctcatcacatacagtacgttccaaagtgtgtgacaaaagtttcaagactagctatgggtggatcacg |
40467210 |
T |
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| Q |
220 |
agtgcaataagagaataagtttcaaaactattttttaaaagagcaaaatatactagaatataagtttcaatccaaattg |
298 |
Q |
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| T |
40467209 |
agtgcaataagagaataagtttcaaaactattttttaaaagagcaaaatatactagaatataagtttcaatcctaattg |
40467131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 40467072 - 40467026
Alignment:
| Q |
339 |
gttattaacattttgccaaaacttgaaagtattgagtatataaatca |
385 |
Q |
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| T |
40467072 |
gttattaccattttgccaaaacttgaaagtattgagtatataaatca |
40467026 |
T |
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