View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4085_low_9 (Length: 345)

Name: NF4085_low_9
Description: NF4085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4085_low_9
NF4085_low_9
[»] chr2 (10 HSPs)
chr2 (17-272)||(12410512-12410776)
chr2 (17-273)||(37647689-37647954)
chr2 (63-273)||(6764144-6764354)
chr2 (17-270)||(12422574-12422836)
chr2 (63-273)||(27271372-27271573)
chr2 (63-273)||(11031502-11031712)
chr2 (66-231)||(2380800-2380965)
chr2 (62-156)||(3044171-3044265)
chr2 (62-197)||(7901139-7901278)
chr2 (72-144)||(34394666-34394738)
[»] chr4 (17 HSPs)
chr4 (17-273)||(43499021-43499286)
chr4 (19-273)||(42718294-42718557)
chr4 (17-273)||(36651852-36652117)
chr4 (17-273)||(7743296-7743561)
chr4 (63-273)||(39059887-39060097)
chr4 (35-273)||(9896635-9896882)
chr4 (63-273)||(37870824-37871034)
chr4 (62-234)||(40850567-40850739)
chr4 (62-222)||(47590630-47590790)
chr4 (72-234)||(56024798-56024960)
chr4 (62-233)||(48640488-48640659)
chr4 (129-214)||(23106853-23106938)
chr4 (99-253)||(50771543-50771697)
chr4 (63-267)||(40345959-40346163)
chr4 (210-273)||(23108098-23108161)
chr4 (63-262)||(30598406-30598605)
chr4 (293-335)||(28359229-28359271)
[»] chr5 (7 HSPs)
chr5 (63-273)||(19021114-19021324)
chr5 (17-273)||(22639283-22639548)
chr5 (62-247)||(26369110-26369295)
chr5 (63-252)||(22580567-22580759)
chr5 (63-253)||(25982354-25982544)
chr5 (63-262)||(40973447-40973646)
chr5 (63-95)||(6536979-6537011)
[»] chr8 (9 HSPs)
chr8 (35-273)||(8444389-8444636)
chr8 (17-272)||(24503779-24504043)
chr8 (63-266)||(45540046-45540249)
chr8 (63-273)||(4034467-4034677)
chr8 (63-273)||(13089953-13090163)
chr8 (62-234)||(9932271-9932443)
chr8 (62-222)||(25582756-25582916)
chr8 (62-234)||(13781019-13781190)
chr8 (62-93)||(10230280-10230311)
[»] scaffold0300 (1 HSPs)
scaffold0300 (35-273)||(9301-9548)
[»] chr7 (16 HSPs)
chr7 (17-273)||(9942713-9942978)
chr7 (35-273)||(1031948-1032195)
chr7 (63-245)||(40871480-40871662)
chr7 (62-234)||(40858195-40858367)
chr7 (63-273)||(17194058-17194267)
chr7 (63-267)||(19323948-19324152)
chr7 (63-267)||(32575193-32575397)
chr7 (63-267)||(38141963-38142167)
chr7 (73-150)||(8123965-8124042)
chr7 (63-267)||(29626637-29626841)
chr7 (63-178)||(12623082-12623197)
chr7 (63-262)||(18299621-18299820)
chr7 (63-267)||(15669415-15669619)
chr7 (63-267)||(29126031-29126233)
chr7 (293-335)||(27324434-27324476)
chr7 (17-64)||(9948872-9948919)
[»] chr1 (14 HSPs)
chr1 (36-273)||(4532217-4532463)
chr1 (64-273)||(33936151-33936360)
chr1 (63-267)||(31911724-31911928)
chr1 (63-273)||(34549075-34549285)
chr1 (63-273)||(19228065-19228274)
chr1 (62-234)||(20505398-20505570)
chr1 (17-172)||(51534589-51534753)
chr1 (62-222)||(26676664-26676824)
chr1 (62-234)||(33676671-33676843)
chr1 (62-212)||(28756653-28756803)
chr1 (63-247)||(27007563-27007747)
chr1 (62-234)||(46731822-46731994)
chr1 (73-267)||(15759681-15759875)
chr1 (63-141)||(52022615-52022693)
[»] chr6 (5 HSPs)
chr6 (63-269)||(18972786-18972993)
chr6 (63-273)||(12912426-12912636)
chr6 (63-269)||(24393632-24393838)
chr6 (62-222)||(6029095-6029255)
chr6 (63-267)||(7093646-7093850)
[»] scaffold0041 (1 HSPs)
scaffold0041 (63-245)||(94620-94802)
[»] scaffold0074 (1 HSPs)
scaffold0074 (63-269)||(23515-23722)
[»] chr3 (4 HSPs)
chr3 (62-234)||(10436606-10436778)
chr3 (62-234)||(20406132-20406304)
chr3 (62-237)||(15029831-15030006)
chr3 (99-267)||(53459119-53459287)
[»] scaffold0432 (1 HSPs)
scaffold0432 (63-262)||(8829-9028)
[»] scaffold0037 (1 HSPs)
scaffold0037 (63-97)||(865-899)
[»] scaffold0020 (1 HSPs)
scaffold0020 (62-94)||(124365-124397)


Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 12410776 - 12410512
Alignment:
Q  17 acaaaaaagaacgttactctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgct 107  Q
    ||||||||||| | |||  |||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  12410776 acaaaaaagaaggctaccttgttacataaatattcctaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgct 12410677  T
Q  108 ttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatca 207  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||||    
T  12410676 ttcagccaccagtatgattggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccatatca 12410577  T
Q  208 cccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgctaaag 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12410576 cccacacacaagatagccaaataagattaagagttgagcgtttgctgttagagaagccgctaaag 12410512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 37647954 - 37647689
Alignment:
Q  17 acaaaaaagaacgttactctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgct 107  Q
    ||||||||||| | |||  |||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  37647954 acaaaaaagaaggctaccatgttacataaatattcctaagcaaggtaaagggtccaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgct 37647855  T
Q  108 ttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatca 207  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| |||||||    
T  37647854 ttcagccaccagtatgattggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatacgagcatttctttcaagccagatca 37647755  T
Q  208 cccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 273  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37647754 cccacacacaggatagccaaataagattaagagttgagcgtttgctgttagagaagccgctaaagg 37647689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 63 - 273
Target Start/End: Complemental strand, 6764354 - 6764144
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||     
T  6764354 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattgaagcttaactttatctaacaattgattaaaagaag 6764255  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6764254 cttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagagaa 6764155  T
Q  263 gccgctaaagg 273  Q
    |||||||||||    
T  6764154 gccgctaaagg 6764144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 12422836 - 12422574
Alignment:
Q  17 acaaaaaagaacgttactctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgct 107  Q
    ||||||||||| | |||  |||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  12422836 acaaaaaagaaggctaccttgttacataaatattcctaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgct 12422737  T
Q  108 ttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatca 207  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||||    
T  12422736 ttcagccaccagtatgattggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccatatca 12422637  T
Q  208 cccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgctaa 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  12422636 cccacacacaagatagccaaataagattaagagttgagcgtttgctgttagagaagctgctaa 12422574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 63 - 273
Target Start/End: Complemental strand, 27271573 - 27271372
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    |||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||||         |||||||||||||||||||     
T  27271573 aaccaccatgaaaggtaggagaaaacaaaactaggacggttcgttttcagccaccagtataattggagctt---------taacaattgattaaaagaag 27271483  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    ||||||||| ||||||||| ||||||||||||| ||| || |||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||    
T  27271482 cttctttttggtgaaatattcgagcatttcttttaagccaaatcacccacacacaagttaggcaaataagattaagagctgagcgtttgctgttagaaaa 27271383  T
Q  263 gccgctaaagg 273  Q
    |||||||||||    
T  27271382 gccgctaaagg 27271372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 63 - 273
Target Start/End: Complemental strand, 11031712 - 11031502
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    |||||||||||||||||||||||||||||| |||| || || || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||     
T  11031712 aaccaccatgaatggtaggagaaaacaaaattaggacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaaagaag 11031613  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    ||||||||| |||||| || |||||||| |||||||| || |||||||||||||| |||||||||||||| ||||||| |||| ||||| |||| |||||    
T  11031612 cttctttttggtgaaagatccgagcattcctttcaagtcaaatcacccacacacatgatagccaaataaggttaagagctgagtgtttgttgtttgaaaa 11031513  T
Q  263 gccgctaaagg 273  Q
     ||||||||||    
T  11031512 accgctaaagg 11031502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 66 - 231
Target Start/End: Original strand, 2380800 - 2380965
Alignment:
Q  66 caccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaactt 165  Q
    ||||| ||||||||||||||||| |||||||| || || ||||||||||| |||||  |||| || ||||||||||||| |||||||||||  ||| |||    
T  2380800 caccaagaatggtaggagaaaacgaaactaggacgatttgctttcagccaccagtaaaattgaagtttaactttatctagcaattgattaattgaagctt 2380899  T
Q  166 ctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataa 231  Q
    || ||| ||||||  |  ||||||| |||||||| || ||||||||||||||||||| ||| ||||    
T  2380900 ctgtttggtgaaaagtctgagcattcctttcaagccaaatcacccacacacaagataaccatataa 2380965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 3044265 - 3044171
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaa 156  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||    
T  3044265 taaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaa 3044171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 197
Target Start/End: Original strand, 7901139 - 7901278
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattgga----gcttaactttatctaacaattgattaaa 157  Q
    |||||||||| |||| |||||||||||||||||||| || || ||||||||||| ||||| ||||| |    |||||||||||||||||||||||||||     
T  7901139 taaccaccataaatgataggagaaaacaaaactaggacgatttgctttcagccaccagtaagattgaagcttgcttaactttatctaacaattgattaat 7901238  T
Q  158 agaaacttctttttagtgaaatatgcgagcatttctttca 197  Q
     ||| ||||| ||| |||||| |  |||||||| ||||||    
T  7901239 tgaagcttctgtttggtgaaaaacccgagcattcctttca 7901278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 34394666 - 34394738
Alignment:
Q  72 gaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatcta 144  Q
    |||||||||||||||||||||||||| || || || |||| |||  |||| ||||| |||||| |||||||||    
T  34394666 gaatggtaggagaaaacaaaactaggacgatttgccttcaaccaatagtaagattgaagcttatctttatcta 34394738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 43499286 - 43499021
Alignment:
Q  17 acaaaaaagaacgttactctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgct 107  Q
    ||||||||||| | ||| ||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  43499286 acaaaaaagaaggctaccctgttacataaatattcctaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgct 43499187  T
Q  108 ttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatca 207  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| | |||||||    
T  43499186 ttcagccaccagtatgattggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcacgccagatca 43499087  T
Q  208 cccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 273  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||    
T  43499086 cccacacacaagatagccaaataagattaagtgttgagcgtttgctattagagaagccgctaaagg 43499021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 42718557 - 42718294
Alignment:
Q  19 aaaaaagaacgttactctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgcttt 109  Q
    ||||||||| | ||| | ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||| ||||||||||||||||    
T  42718557 aaaaaagaaggctaccccgttacataaatattcctaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaattaggtcggttcgcttt 42718458  T
Q  110 cagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacc 209  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  42718457 cagccaccagtatgattggagcttaactttatctaacaattgattaaaataagcttctttttggtgaaatatgcgagcatttctttcaagccagatcacc 42718358  T
Q  210 cacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 273  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42718357 cacacacaagatagccaaataagattaagagttgagcgtttgttgttagaaaagccgctaaagg 42718294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 36651852 - 36652117
Alignment:
Q  17 acaaaaaagaacgttactctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgct 107  Q
    |||||| |||| |||||  |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||| |||||||||||    
T  36651852 acaaaatagaaggttaccatgttacataaatattcctaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaagtcggttcgct 36651951  T
Q  108 ttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatca 207  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||    
T  36651952 ttcagccaccaatatgattggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccagatca 36652051  T
Q  208 cccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 273  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  36652052 cccacacacaagatagccaaataagattaagagttgagtgtttgctgttagagaagccgctaaagg 36652117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 7743561 - 7743296
Alignment:
Q  17 acaaaaaagaacgttactctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgct 107  Q
    ||||||||||| | ||| ||| ||||||||||||||||| ||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  7743561 acaaaaaagaaggctaccctgctacataaatattcctaaacaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgct 7743462  T
Q  108 ttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatca 207  Q
    |||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||    
T  7743461 ttcaaccaccagtatgattgaagcttaactttatttaacaattgattaaaagaagcttctttttggtggaatatgcgagcatttctttcaagccagatca 7743362  T
Q  208 cccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 273  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  7743361 cccacacgcaagatagccaaataagattaagagttgagcgtttgctgttagagaagccgttaaagg 7743296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 63 - 273
Target Start/End: Original strand, 39059887 - 39060097
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    |||||||||||||||||||||||||||||||| ||  ||||||||||||| || ||||||||||| ||||||| |||||||||||||||||||||||||     
T  39059887 aaccaccatgaatggtaggagaaaacaaaacttgggtggttcgctttcagtcaccagtatgattgaagcttaattttatctaacaattgattaaaagaag 39059986  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    ||||||||| ||| ||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  39059987 cttctttttggtggaatattcgagcattcctttcaagtcagatcacccacacacaagatagtcaaataagattaagagctgagcgtttgctgttagaaaa 39060086  T
Q  263 gccgctaaagg 273  Q
    |||||||||||    
T  39060087 gccgctaaagg 39060097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 35 - 273
Target Start/End: Original strand, 9896635 - 9896882
Alignment:
Q  35 ctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgat 125  Q
    |||||||||||||||||| |||||||||||         |||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||    
T  9896635 ctgttacataaatattcccaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaacttgggcggttcgctttcagccaccagtatgat 9896734  T
Q  126 tggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagcc 225  Q
    || || ||||||||||||||||||||||||||| || ||||||||| ||| ||||| |||||||| |||||||| |||||||||||||||||||||||||    
T  9896735 tgaagtttaactttatctaacaattgattaaaataagcttctttttggtggaatattcgagcattcctttcaagccagatcacccacacacaagatagcc 9896834  T
Q  226 aaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 273  Q
    ||||||||||||||| | ||||||||| |||||| ||||| |||||||    
T  9896835 aaataagattaagagattagcgtttgccgttagagaagccactaaagg 9896882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 63 - 273
Target Start/End: Original strand, 37870824 - 37871034
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||||||||||||||||||||||||| ||| || || || ||||||||  |||| ||||| | ||| |||||||||| ||||||||||||||||     
T  37870824 aaccaccatgaatggtaggagaaaacaaaaccaggacgatttgccttcagccactagtaagattgaaacttgactttatctagcaattgattaaaagaag 37870923  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    ||||||||| |||||| || ||| |||| |||||||| || ||||| |||||||| |||||||||||||| ||||||| |||| ||||| |||| |||||    
T  37870924 cttctttttggtgaaagatccgatcattcctttcaagccaaatcactcacacacatgatagccaaataaggttaagagctgagtgtttgttgtttgaaaa 37871023  T
Q  263 gccgctaaagg 273  Q
     ||| ||||||    
T  37871024 accgataaagg 37871034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 62 - 234
Target Start/End: Complemental strand, 40850739 - 40850567
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 161  Q
    ||||||||| ||||||||||| |||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  40850739 taaccaccaagaatggtaggaaaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 40850640  T
Q  162 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 234  Q
     ||||| ||| |||||| || ||||||||  ||||||| || ||||||||||||||||||| ||| |||||||    
T  40850639 gcttctgtttggtgaaaaatccgagcattcatttcaagccaaatcacccacacacaagataaccatataagat 40850567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 47590630 - 47590790
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 161  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| || || ||||| |||||||||||||||| |||||||||||  |||    
T  47590630 taaccaccaagaatggtaggagaaaacaaaactaggacgatttgctttcagccaccaataagattgaagcttaactttatctagcaattgattaatcgaa 47590729  T
Q  162 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagata 222  Q
    |||||| ||| |||||| |  |||||||| |||||||| || |||||||||||||||||||    
T  47590730 acttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagata 47590790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 72 - 234
Target Start/End: Complemental strand, 56024960 - 56024798
Alignment:
Q  72 gaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttcttttt 171  Q
    |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  ||| ||||| |||    
T  56024960 gaatggtaggagaaaacaaaactaggacgatttgctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaagcttctgttt 56024861  T
Q  172 agtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 234  Q
     |||||| |  |||||||| |||||||| || |||| |||||||||||||| ||| |||||||    
T  56024860 ggtgaaaaacccgagcattcctttcaagccaaatcaaccacacacaagataaccatataagat 56024798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 62 - 233
Target Start/End: Complemental strand, 48640659 - 48640488
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 161  Q
    ||||||||| |||||||||||||||||||||||| | || || ||||||||||| ||||| ||||| || ||||||||||||| || ||||||||  |||    
T  48640659 taaccaccaagaatggtaggagaaaacaaaactatgacgatttgctttcagccaccagtaagattgaagattaactttatctagcagttgattaatcgaa 48640560  T
Q  162 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataaga 233  Q
     ||||| ||| |||||| |  ||||||||  ||||||| || ||||||||||||||||||| ||| ||||||    
T  48640559 gcttctgtttggtgaaaaacccgagcattcatttcaagccaaatcacccacacacaagataaccatataaga 48640488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 23106853 - 23106938
Alignment:
Q  129 agcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacac 214  Q
    ||||||| |||||||| |||||||||||||||| ||||||||| |||||| || |||||||| |||||||| || |||||||||||    
T  23106853 agcttaattttatctagcaattgattaaaagaagcttctttttggtgaaagatccgagcattcctttcaagccaaatcacccacac 23106938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 99 - 253
Target Start/End: Complemental strand, 50771697 - 50771543
Alignment:
Q  99 cggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaa 198  Q
    ||||||||||||||||| ||||||||||| ||  ||| ||||||||  |||||||| || || || |||||||  ||||| |  ||||  |||||||| |    
T  50771697 cggttcgctttcagccaccagtatgattgaagtataattttatctagtaattgattgaacgagacctctttttgatgaaagactcgagtgtttctttcta 50771598  T
Q  199 ggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgct 253  Q
    | || ||||||||||||||||| ||||| || ||||||| || |||||| |||||    
T  50771597 gccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgct 50771543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 267
Target Start/End: Original strand, 40345959 - 40346163
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||  |||||||||| ||| ||||  || | | ||||||||||||||| ||||||||||| || |||| ||||||||  |||||| | || ||      
T  40345959 aaccaccacaaatggtaggaaaaagcaaaggtatgacagttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgaatgaacgagg 40346058  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    | |||||||  ||||| |  ||||  |||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  40346059 cctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 40346158  T
Q  263 gccgc 267  Q
     ||||    
T  40346159 cccgc 40346163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 23108098 - 23108161
Alignment:
Q  210 cacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 273  Q
    |||||||| |||||||||||||| ||||||| |||| |||||||||| ||||| ||||||||||    
T  23108098 cacacacatgatagccaaataaggttaagagctgagtgtttgctgtttgaaaaaccgctaaagg 23108161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 262
Target Start/End: Original strand, 30598406 - 30598605
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||  |||||||||| ||| ||||  ||||| |||||||||||||||| ||||||||||| || |||| |||||| |  |||||||| || || |    
T  30598406 aaccaccacaaatggtaggaaaaagcaaaggtaggttggttcgctttcagccaccagtatgattgaagtttaattttatccagtaattgattgaacgata 30598505  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    | |||||||  ||||| |   | |  |||||||| |  || ||||||||||||||||| || || || ||||||| || |||||| ||||| || |||||    
T  30598506 cctctttttgatgaaagacctgtgtgtttctttctatccaaatcacccacacacaagaaagtcatatgagattaaaagctgagcggttgcttttggaaaa 30598605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 335
Target Start/End: Complemental strand, 28359271 - 28359229
Alignment:
Q  293 taaaacaaaaacctcaaaatccacctgatacataattcctttg 335  Q
    |||||||| |||||||||||||||||||||||| |||||||||    
T  28359271 taaaacaacaacctcaaaatccacctgatacatgattcctttg 28359229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 63 - 273
Target Start/End: Complemental strand, 19021324 - 19021114
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  19021324 aaccaccatgaatggcaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattggagcttaactttatctaacaattgattaaaagaag 19021225  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  19021224 cttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagagaa 19021125  T
Q  263 gccgctaaagg 273  Q
    |||||||||||    
T  19021124 gccgctaaagg 19021114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 22639548 - 22639283
Alignment:
Q  17 acaaaaaagaacgttactctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgct 107  Q
    |||||| |||| | ||| ||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||| ||    
T  22639548 acaaaatagaaggctaccctgttacataaatattcctaagcaaggtaaatggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcact 22639449  T
Q  108 ttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatca 207  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||||    
T  22639448 ttcagccaccaatatgattggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcattcctttcaagccagatca 22639349  T
Q  208 cccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 273  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||    
T  22639348 cccacacacaagatagccaaataagattaagagaagagcgtttgctgttagagaagccgctaaagg 22639283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 62 - 247
Target Start/End: Original strand, 26369110 - 26369295
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 161  Q
    ||||||||| |||| ||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  26369110 taaccaccaagaatagtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 26369209  T
Q  162 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcg 247  Q
     ||||| ||| |||||| |  |||||||| |||||||| || ||||||||||||||||||| ||| ||||||| || ||| |||||    
T  26369210 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaagtggagcg 26369295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 63 - 252
Target Start/End: Original strand, 22580567 - 22580759
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatca---gtatgattggagcttaactttatctaacaattgattaaaag 159  Q
    |||||||| ||||||||||| |||  ||||||||| |  |||||||||||||| ||   ||| ||||| ||||| |||||||||| |||||||||||| |    
T  22580567 aaccaccacgaatggtaggaaaaagtaaaactaggactattcgctttcagccagcaccagtaagattgaagcttcactttatctagcaattgattaaacg 22580666  T
Q  160 aaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgc 252  Q
    ||  || | |||  ||||| |  ||| |||| |||||||| || ||||||| ||||||||||||||| |||||||||| ||||||||| ||||    
T  22580667 aagtttatatttgttgaaagacccgaacattcctttcaagccaaatcacccgcacacaagatagccatataagattaaaagttgagcggttgc 22580759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 253
Target Start/End: Original strand, 25982354 - 25982544
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||  |||||||||| |||||||| || || ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||||  || || |    
T  25982354 aaccaccacaaatggtaggaaaaaacaaagcttggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgatggaacgaga 25982453  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgct 253  Q
    | |||||||  ||||| |  || || |||||||| |  || |||||||||||| |||| ||||| || ||||||| ||||||||| |||||    
T  25982454 cctctttttgatgaaagacacgggcgtttctttctatccaaatcacccacacagaagaaagccatatgagattaaaagttgagcggttgct 25982544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 63 - 262
Target Start/End: Original strand, 40973447 - 40973646
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||  |||||||||| |||  ||||||||| ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||||  || ||      
T  40973447 aaccaccacaaatggtaggaaaaagtaaaactaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgatggaacgagg 40973546  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    | |||||||  ||||| |  ||||| |||||||| |  || || |||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  40973547 cctctttttgatgaaagacccgagcgtttctttctatccaaataacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 40973646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 6537011 - 6536979
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaacta 95  Q
    |||||||||||||||||||||||||||||||||    
T  6537011 aaccaccatgaatggtaggagaaaacaaaacta 6536979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 35 - 273
Target Start/End: Original strand, 8444389 - 8444636
Alignment:
Q  35 ctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgat 125  Q
    ||||||||||||||||||||||||||||||         | ||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||    
T  8444389 ctgttacataaatattcctaagcaaggtaaagagttcaacaaccatgaatggtaagagaaaacaaaactaggtcgattcgctttcagccaccagtatgat 8444488  T
Q  126 tggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagcc 225  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8444489 tggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgagcattcctttcaaggcagatcacccacacacaagatagcc 8444588  T
Q  226 aaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 273  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  8444589 aaataagattaagagttgagcgtttgctgttagagaagccgctaaagg 8444636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 24504043 - 24503779
Alignment:
Q  17 acaaaaaagaacgttactctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgct 107  Q
    ||||||||||| | ||| ||||||||||||||||||||| ||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  24504043 acaaaaaagaaggctaccctgttacataaatattcctaaacaaggtaaagggttcagccaccatgaatggtaggagaaaacaaaactaggtcggttcgct 24503944  T
Q  108 ttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatca 207  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||||| || ||||    
T  24503943 ttcaaccaccagtatgattggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcgaacattactttcaagacaaatca 24503844  T
Q  208 cccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgctaaag 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  24503843 cccacacacaagatagccaaataagattaagagttgagcgtttgctgttagagaagcagctaaag 24503779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 63 - 266
Target Start/End: Complemental strand, 45540249 - 45540046
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||     
T  45540249 aaccaccatgaatggtaggagaaaacaaaactaaggcggttcgctttcagccaccagtatgattgaagtttaactttatctaacaattgattaaaagaag 45540150  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    ||||||||| ||||||| | |||||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| ||    
T  45540149 cttctttttggtgaaatgttcgagcattcctttcaagctagatcacccacacacaagatagacaaataagattaagagttgagagtttgttgttagagaa 45540050  T
Q  263 gccg 266  Q
    ||||    
T  45540049 gccg 45540046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 63 - 273
Target Start/End: Original strand, 4034467 - 4034677
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| ||||| |||||||| | ||||||||||||||||     
T  4034467 aaccaccatgaatggtaggagaaaacaaaactaggacgatttgctttcagccaccagtaagattgaagcttgactttatccagcaattgattaaaagaag 4034566  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    ||||||||| |||||| ||  || |||| |||||||| || |||||||||||||| |||||||||||||| ||||||| |||| ||||| |||| |||||    
T  4034567 cttctttttggtgaaagatctgatcattcctttcaagccaaatcacccacacacatgatagccaaataaggttaagagctgagtgtttgttgtttgaaaa 4034666  T
Q  263 gccgctaaagg 273  Q
     ||| ||||||    
T  4034667 accgataaagg 4034677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 63 - 273
Target Start/End: Original strand, 13089953 - 13090163
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||| ||||||||||||||||||||||||| || || || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||     
T  13089953 aaccaccataaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaaagaag 13090052  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    ||||||||| |||||| || ||| |||| |||||||| || |||||||||||||| |||||||||||||| ||||||| |||| ||||| |||| |||||    
T  13090053 cttctttttggtgaaagatccgatcattcctttcaagccaaatcacccacacacatgatagccaaataaggttaagagctgagtgtttgttgtttgaaaa 13090152  T
Q  263 gccgctaaagg 273  Q
     ||| ||||||    
T  13090153 accgataaagg 13090163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 62 - 234
Target Start/End: Original strand, 9932271 - 9932443
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 161  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  9932271 taaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 9932370  T
Q  162 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 234  Q
     ||||| ||| |||||| |  |||||||| |||||||| || ||||||||||||||||||| ||| |||||||    
T  9932371 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 9932443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 25582756 - 25582916
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 161  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  25582756 taaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 25582855  T
Q  162 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagata 222  Q
     ||||| ||| |||||| |  |||||||| |||||||| || |||||||||||||||||||    
T  25582856 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagata 25582916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 62 - 234
Target Start/End: Original strand, 13781019 - 13781190
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 161  Q
    ||||||||| ||||||||||||||||||||| |||| || || ||||||||||| ||||| ||||| ||||||||||||| |||||||| | |||  |||    
T  13781019 taaccaccaagaatggtaggagaaaacaaaattaggacgatttgctttcagcca-cagtaagattgaagcttaactttatttaacaattaagtaatcgaa 13781117  T
Q  162 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 234  Q
     ||||| ||| |||||| |  |||||||| |||||||| || |||| |||||||||||||| ||| |||||||    
T  13781118 gcttctatttggtgaaaaacccgagcattcctttcaagccaaatcatccacacacaagataaccatataagat 13781190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 93
Target Start/End: Original strand, 10230280 - 10230311
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaac 93  Q
    ||||||||||||||||||||||||||||||||    
T  10230280 taaccaccatgaatggtaggagaaaacaaaac 10230311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 35 - 273
Target Start/End: Complemental strand, 9548 - 9301
Alignment:
Q  35 ctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgat 125  Q
    ||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9548 ctgttacataaatattcctaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgat 9449  T
Q  126 tggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagcc 225  Q
    || |||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  9448 tgaagcttaactttatctaacaattgattaaaataagcttctttttggtgaaatatgcgagcattcctttcaagccagatcacccacacacaagatagcc 9349  T
Q  226 aaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 273  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||    
T  9348 aaataagattaagagttgagcgtttgctgttagagaagctgctaaagg 9301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 9942713 - 9942978
Alignment:
Q  17 acaaaaaagaacgttactctgttacataaatattcctaagcaag-------gt--aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgct 107  Q
    ||||||||||| | |||||||||||||||||||||||||| |||       ||  ||| |||||||||||||||||||||||||||||||||||||||||    
T  9942713 acaaaaaagaaggctactctgttacataaatattcctaagtaagacaaatggttcaactaccatgaatggtaggagaaaacaaaactaggtcggttcgct 9942812  T
Q  108 ttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatca 207  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| |||||||    
T  9942813 ttcagccaccagtatgattggagcttaactttatctaacaattgattaaaagaagcttctttttggtgaaatatgcaagcatttctttcaagccagatca 9942912  T
Q  208 cccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 273  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  9942913 cccacacacaagatagtcaaataagattaagagttgagtgtttgctgtcagagaagccgctaaagg 9942978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 35 - 273
Target Start/End: Complemental strand, 1032195 - 1031948
Alignment:
Q  35 ctgttacataaatattcctaagcaaggtaa---------ccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgat 125  Q
    ||||||||||||||||||||||||||||||         ||||||||||| |||||||||||||||||||    |||||||||||||||| |||||||||    
T  1032195 ctgttacataaatattcctaagcaaggtaaatggttcaaccaccatgaatagtaggagaaaacaaaactattgtggttcgctttcagccaccagtatgat 1032096  T
Q  126 tggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagcc 225  Q
    || ||||||||||||||||| ||||||||||||||| ||||||||| ||||||||| ||||| || ||||||||  ||||||||||||||||| ||||||    
T  1032095 tgaagcttaactttatctaataattgattaaaagaagcttctttttggtgaaatattcgagcgttcctttcaagctagatcacccacacacaatatagcc 1031996  T
Q  226 aaataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 273  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  1031995 aaataagattcagagttgagcgtttgttgttagagaagccgctaaagg 1031948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 63 - 245
Target Start/End: Original strand, 40871480 - 40871662
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||||||||||||||||||||||||||||| || || || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||     
T  40871480 aaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaaagaag 40871579  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgag 245  Q
    ||||||||| |||||| || ||| |||| |||||||| || |||||||||||| | |||||||||||||| ||||||| ||||    
T  40871580 cttctttttggtgaaagatccgatcattcctttcaagccaaatcacccacacaaatgatagccaaataaggttaagagctgag 40871662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 62 - 234
Target Start/End: Original strand, 40858195 - 40858367
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 161  Q
    ||||||| | |||||| ||||||||||||||||||| || || ||||||||||||||||| ||||| |||||||||||||||| |||||||||||  |||    
T  40858195 taaccactaagaatggaaggagaaaacaaaactaggacgattagctttcagccatcagtaagattgaagcttaactttatctagcaattgattaatcgaa 40858294  T
Q  162 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 234  Q
     ||||| ||| |||||| |  ||||||||  ||||||| || ||||||||||||||||||| ||| |||||||    
T  40858295 gcttctgtttggtgaaaaacccgagcattcatttcaagccaaatcacccacacacaagataaccatataagat 40858367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 63 - 273
Target Start/End: Original strand, 17194058 - 17194267
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    |||||||| ||||||||||||| |||||||||| | || ||  |||||||||| ||||  ||||| |||||||||||||||| ||||||||||||||||     
T  17194058 aaccaccacgaatggtaggagagaacaaaactatgacgattttctttcagccaccagtgagattgaagcttaactttatctagcaattgattaaaagaag 17194157  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    ||| || || || ||| ||   |||||| |||||||| || ||||| ||||||||||||| ||||||||| ||||||||| || || | |||||||||||    
T  17194158 ctttttattggt-aaagatttaagcattcctttcaagtcaaatcactcacacacaagataaccaaataaggttaagagttaagtgtctactgttagaaaa 17194256  T
Q  263 gccgctaaagg 273  Q
     ||||||||||    
T  17194257 accgctaaagg 17194267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 267
Target Start/End: Complemental strand, 19324152 - 19323948
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||  |||||||||| ||| ||||  |||| ||||||||||||||||| | ||||||||| || |||| ||||||||  |||||||| || ||      
T  19324152 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccggtatgattgaagtttaattttatctagtaattgattgaacgagg 19324053  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    | |||||||  ||||| |  ||||| |||||||| |  || ||||||||||||||||| ||||| || || |||| ||||||||| ||||| || |||||    
T  19324052 cctctttttgatgaaagacccgagcgtttctttctatccaaatcacccacacacaagaaagccatatgaggttaaaagttgagcggttgcttttggaaaa 19323953  T
Q  263 gccgc 267  Q
     ||||    
T  19323952 cccgc 19323948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 267
Target Start/End: Complemental strand, 32575397 - 32575193
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||  |||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||||| || ||      
T  32575397 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgattgaacgagg 32575298  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    | |||||||  ||||| |  ||||  |||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  32575297 cctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcgattgcttttggaaaa 32575198  T
Q  263 gccgc 267  Q
     ||||    
T  32575197 cccgc 32575193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 267
Target Start/End: Complemental strand, 38142167 - 38141963
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||  |||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||| || |||| ||||||||| |||||| | || ||      
T  38142167 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctaataattgaatgaacgagg 38142068  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    | |||||||  ||||| |  ||||  |||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  38142067 cctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 38141968  T
Q  263 gccgc 267  Q
     ||||    
T  38141967 cccgc 38141963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 8124042 - 8123965
Alignment:
Q  73 aatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaatt 150  Q
    ||||||||||||||||||||||||| || || ||||||| ||| ||||| ||||| ||||||||||||||||||||||    
T  8124042 aatggtaggagaaaacaaaactaggacgattagctttcaaccaccagtaagattgaagcttaactttatctaacaatt 8123965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 63 - 267
Target Start/End: Complemental strand, 29626841 - 29626637
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||  |||||||||| ||| ||||  |||| |||||||||||||||||||||||| |||| || |||| |||||| |  |||||| | || ||      
T  29626841 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccatcagtattattgaagtttaattttatcaagtaattgaatgaacgagg 29626742  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    | |||||||  ||||| || ||||  |||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  29626741 cctctttttgatgaaagatccgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 29626642  T
Q  263 gccgc 267  Q
     ||||    
T  29626641 cccgc 29626637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 178
Target Start/End: Original strand, 12623082 - 12623197
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||| |||||||||||| |||||||||||||||| || || || ||| ||||  |||| ||||| ||||| |||||||||| |||||| |||||||||     
T  12623082 aaccatcatgaatggtagaagaaaacaaaactaggacgatttgccttcggccacaagtaagattgaagcttgactttatctagcaattgtttaaaagaag 12623181  T
Q  163 cttctttttagtgaaa 178  Q
    | ||||||| ||||||    
T  12623182 cctctttttggtgaaa 12623197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 262
Target Start/End: Original strand, 18299621 - 18299820
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||  |||||||||| ||| |||| ||||| |||||| |||||||||| ||||||||||| || |||| ||||||||  |||||||  || ||      
T  18299621 aaccaccacaaatggtaggaaaaagcaaagctaggacggttccctttcagccaccagtatgattgaagtttaattttatctagtaattgatggaacgagg 18299720  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    | |||||||  ||||| |  |||||  ||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  18299721 cctctttttgatgaaagacccgagcgattctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 18299820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 267
Target Start/End: Complemental strand, 15669619 - 15669415
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||  |||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||||| ||  |      
T  15669619 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgattgaacaagg 15669520  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    | |||||||   |||| |  ||||  |||||||| |   | ||||||||||||||||| ||||| || ||||||| ||||||||| ||||| || |||||    
T  15669519 cctctttttgaagaaagacccgagtgtttctttctatcgaaatcacccacacacaagaaagccatatgagattaaaagttgagcggttgcttttggaaaa 15669420  T
Q  263 gccgc 267  Q
     ||||    
T  15669419 cccgc 15669415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 267
Target Start/End: Original strand, 29126031 - 29126233
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||  |||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||| |  |||| ||||||||  |||||||| || ||      
T  29126031 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaaatttaattttatctagtaattgattgaacgagg 29126130  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    | |||||||  ||||| |  ||||  |||||||| |  || ||||||  ||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  29126131 cctctttttgatgaaagacccgagtgtttctttctatccaaatcacc--cacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 29126228  T
Q  263 gccgc 267  Q
     ||||    
T  29126229 cccgc 29126233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 335
Target Start/End: Complemental strand, 27324476 - 27324434
Alignment:
Q  293 taaaacaaaaacctcaaaatccacctgatacataattcctttg 335  Q
    |||||||| |||||||||||||||||||||||| |||||||||    
T  27324476 taaaacaacaacctcaaaatccacctgatacatgattcctttg 27324434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 9948919 - 9948872
Alignment:
Q  17 acaaaaaagaacgttactctgttacataaatattcctaagcaaggtaa 64  Q
    |||||| |||| | ||| ||||||||||||||||||||||||||||||    
T  9948919 acaaaatagaaggctaccctgttacataaatattcctaagcaaggtaa 9948872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 36 - 273
Target Start/End: Original strand, 4532217 - 4532463
Alignment:
Q  36 tgttacataaatattcctaagcaaggt---------aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgatt 126  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4532217 tgttacataaatattcctaagcaaggtgaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgatt 4532316  T
Q  127 ggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagcca 226  Q
    || ||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| ||    
T  4532317 ggtgcttaactttatctaacaattgattaaaagaagtttctttttggtgaaatatgcgagcattcctttcaagtcagatcacccacacacaagatagtca 4532416  T
Q  227 aataagattaagagttgagcgtttgctgttagaaaagccgctaaagg 273  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||    
T  4532417 aataagattaagagttgagcgtttgctgttagagaagccgccaaagg 4532463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 64 - 273
Target Start/End: Complemental strand, 33936360 - 33936151
Alignment:
Q  64 accaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaac 163  Q
    ||||||| |||||||| ||||||||||||||| | || |||||||||||  ||||||| ||||| ||||||||||||| || |||||||||||| ||| |    
T  33936360 accaccacgaatggtaagagaaaacaaaactatgacgattcgctttcagttatcagtaagattgaagcttaactttatttagcaattgattaaacgaatc 33936261  T
Q  164 ttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaag 263  Q
    ||| |||| |||||| || |||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||     
T  33936260 ttcattttggtgaaagatccgagcattcctttcaagccaaatcacccacacacaagatagctaaataagattaagagttgtgtgtttgctgttagaaaaa 33936161  T
Q  264 ccgctaaagg 273  Q
    ||||||||||    
T  33936160 ccgctaaagg 33936151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 63 - 267
Target Start/End: Original strand, 31911724 - 31911928
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    |||||||| |||||||||||||||||||||||| | || ||| ||||||||||  |||| ||||| |||||||||||||||| |||||||||||| ||||    
T  31911724 aaccaccacgaatggtaggagaaaacaaaactatgacgattcactttcagccactagtaagattgaagcttaactttatctagcaattgattaaacgaaa 31911823  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    ||||||||| |||||| ||  ||||||| |||||||| || |||||||| ||||||||||||||||||||||||| || |||||| ||||| ||||| ||    
T  31911824 cttctttttggtgaaagatctgagcattcctttcaagtcaaatcacccatacacaagatagccaaataagattaaaagctgagcggttgctattagagaa 31911923  T
Q  263 gccgc 267  Q
    |||||    
T  31911924 gccgc 31911928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 63 - 273
Target Start/End: Complemental strand, 34549285 - 34549075
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||||||||||||||||||||||||||||| || || || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||     
T  34549285 aaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaaagaag 34549186  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    ||||||||| || ||| || | | |||| |||||||| || |||||||||||||| |||||||||||||| ||||||| |||| ||||| |||| |||||    
T  34549185 cttctttttggttaaagatcctatcattcctttcaagccatatcacccacacacatgatagccaaataaggttaagagctgagtgtttgttgtttgaaaa 34549086  T
Q  263 gccgctaaagg 273  Q
     ||| ||||||    
T  34549085 accgataaagg 34549075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 63 - 273
Target Start/End: Original strand, 19228065 - 19228274
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||||||||||||||||||||||||||||| || ||  | |||||||| |  || ||||| ||||| |||||||||| ||||||||||||||||     
T  19228065 aaccaccatgaatggtaggagaaaacaaaactaggacgatttaccttcagccaccgataagattgaagcttgactttatctagcaattgattaaaagaag 19228164  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    ||||||||| |||||| || |||||||| |||||||| || |||||||||||||| ||||||||||| || ||||||| |||| ||||| |||| |||||    
T  19228165 cttctttttggtgaaagatccgagcattcctttcaagccaaatcacccacacacatgatagccaaat-aggttaagagctgagtgtttgttgtttgaaaa 19228263  T
Q  263 gccgctaaagg 273  Q
     ||||||||||    
T  19228264 accgctaaagg 19228274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 62 - 234
Target Start/End: Complemental strand, 20505570 - 20505398
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 161  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  20505570 taaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 20505471  T
Q  162 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 234  Q
     ||||| ||| |||||| |  |||||||| |||||||| || ||||||||||||||||||| ||| |||||||    
T  20505470 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 20505398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 51534589 - 51534753
Alignment:
Q  17 acaaaaaagaacgttactctgttacataaatattcctaagcaaggtaac---------caccatgaatggtaggagaaaacaaaactaggtcggttcgct 107  Q
    |||||| |||| | ||| || |||||||||||||||||||||||||||          ||||||||||||||||||||| ||||||||||||||||||||    
T  51534589 acaaaatagaatgctaccctattacataaatattcctaagcaaggtaaagggttcaatcaccatgaatggtaggagaaaccaaaactaggtcggttcgct 51534688  T
Q  108 ttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttcttttta 172  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  51534689 ttcagccaccaatatgattggagcttaactttatctaacaattgattaaaagaagtttcttttta 51534753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 62 - 222
Target Start/End: Complemental strand, 26676824 - 26676664
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 161  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  26676824 taaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 26676725  T
Q  162 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagata 222  Q
     ||||| ||| |||||| |  |||||||| |||||||| || |||||||||||||||||||    
T  26676724 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagata 26676664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 62 - 234
Target Start/End: Original strand, 33676671 - 33676843
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 161  Q
    ||||||||| |||||||||||||||||||||||||| || || |||||||||||  |||| ||||| |||||||||||||||| |||||||||||  |||    
T  33676671 taaccaccaagaatggtaggagaaaacaaaactaggacgatttgctttcagccactagtaagattgaagcttaactttatctagcaattgattaatcgaa 33676770  T
Q  162 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 234  Q
    |||||| ||| |||||| |   ||||||| |||||||| || ||||| ||||||||||||| ||| |||||||    
T  33676771 acttctgtttggtgaaaaacctgagcattcctttcaagccaaatcactcacacacaagataaccatataagat 33676843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 62 - 212
Target Start/End: Original strand, 28756653 - 28756803
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 161  Q
    ||||||||| ||||||||||||||||||||||||||  | || ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||  |||    
T  28756653 taaccaccaagaatggtaggagaaaacaaaactaggatgatttgctttcagccaccagtaagattgaagcttaactttatctaacaattgattaatcgaa 28756752  T
Q  162 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccac 212  Q
     ||||| ||| |||||| |  |||||||| |||||||| || |||||||||    
T  28756753 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccac 28756803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 63 - 247
Target Start/End: Original strand, 27007563 - 27007747
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    |||||||| |||||||||||||||||||||||||     |||||||||||| | || |||||||| |  |||||| |||||| |||||||||||| |||     
T  27007563 aaccaccacgaatggtaggagaaaacaaaactagaaaaattcgctttcagctaccaatatgattgaaatttaactctatctagcaattgattaaacgaag 27007662  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcg 247  Q
     |||||||| |||||| |  ||| ||||  ||||||| || |||||||||||||||||||| || ||||| |||| || ||||||    
T  27007663 attctttttggtgaaagacccgaacattcatttcaagccaaatcacccacacacaagatagtcatataagtttaaaagctgagcg 27007747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 62 - 234
Target Start/End: Complemental strand, 46731994 - 46731822
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 161  Q
    |||||||||  |||||||||||||||||||| |||| || || |||||||| || ||| | ||||| |||||||||||||||| |||||||||||  |||    
T  46731994 taaccaccaaaaatggtaggagaaaacaaaattaggacgatttgctttcagtcaccagcaagattgaagcttaactttatctagcaattgattaatcgaa 46731895  T
Q  162 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 234  Q
     ||| | ||| |||||| |  |||  ||| |||||||| || ||||||||||||||||||| ||| |||||||    
T  46731894 gcttttgtttggtgaaaaacccgattattcctttcaagccaaatcacccacacacaagataaccatataagat 46731822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 267
Target Start/End: Complemental strand, 15759875 - 15759681
Alignment:
Q  73 aatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttcttttta 172  Q
    |||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||||| || || || |||||||     
T  15759875 aatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgattgaacgagacctctttttg 15759776  T
Q  173 gtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgc 267  Q
     ||||| |  ||||  |||||||| |  || |||||| |||||||||| ||||| || ||||||| ||||||||| ||||| || ||||| ||||    
T  15759775 atgaaagacccgagtgtttctttctatccaaatcacctacacacaagaaagccatatgagattaaaagttgagcggttgcttttggaaaacccgc 15759681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 63 - 141
Target Start/End: Complemental strand, 52022693 - 52022615
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttat 141  Q
    |||||||||||||| |||||||||||||||||||| |  ||||||||| ||| |||||| ||||| |||||||||||||    
T  52022693 aaccaccatgaatgataggagaaaacaaaactaggacaattcgctttcggccgtcagtaagattgaagcttaactttat 52022615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 63 - 269
Target Start/End: Original strand, 18972786 - 18972993
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaa-caattgattaaaagaa 161  Q
    ||||||||||||||||||||||||||||||||||| || || |||||||||||  |||| ||||| |||||||||||||| || |||||||||||| |||    
T  18972786 aaccaccatgaatggtaggagaaaacaaaactaggacgatttgctttcagccacgagtaagattgaagcttaactttatcaaagcaattgattaaacgaa 18972885  T
Q  162 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaa 261  Q
     ||||||||| |||||| ||  ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||  |||  |||| |||||||||    
T  18972886 gcttctttttggtgaaagattagagcattcctttcaagccaaatcacccacacacaagatagccaaataagattaagagcggagtttttgttgttagaaa 18972985  T
Q  262 agccgcta 269  Q
    | ||||||    
T  18972986 aaccgcta 18972993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 63 - 273
Target Start/End: Original strand, 12912426 - 12912636
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||||||||||||||||||||||||||||| || || || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||     
T  12912426 aaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaaagaag 12912525  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    ||||||||| |||||| || | | |||| |||||||| || |||||||||||||| |||||||||||||| ||||||| |||| ||||| |||| |||||    
T  12912526 cttctttttggtgaaagatccaatcattcctttcaagccatatcacccacacacatgatagccaaataaggttaagagctgagtgtttgttgtttgaaaa 12912625  T
Q  263 gccgctaaagg 273  Q
     ||| ||||||    
T  12912626 accgataaagg 12912636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 63 - 269
Target Start/End: Complemental strand, 24393838 - 24393632
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    |||||||| |||||||||||||||||||||||||| || ||  |||||||||| ||||| |||||  ||||||||||||| |||||||||||||| |||     
T  24393838 aaccaccacgaatggtaggagaaaacaaaactaggacgatttactttcagccaccagtaagattgaggcttaactttatcaaacaattgattaaacgaag 24393739  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    ||||||||| |||||| || | |||||| |||||| | || |||||||||||||||||||||||||||||||||||||  ||| ||||| ||||||||||    
T  24393738 cttctttttggtgaaagattccagcattcctttcatgccaaatcacccacacacaagatagccaaataagattaagagcggagtgtttgttgttagaaaa 24393639  T
Q  263 gccgcta 269  Q
     ||||||    
T  24393638 accgcta 24393632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 62 - 222
Target Start/End: Complemental strand, 6029255 - 6029095
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 161  Q
    ||||||||||| |||||||||||||||||||||||| || ||||||||||||||  | || ||||| |||||||||||||||| |||||||||||  |||    
T  6029255 taaccaccatgtatggtaggagaaaacaaaactaggacgattcgctttcagccactaataagattgaagcttaactttatctagcaattgattaatcgaa 6029156  T
Q  162 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagata 222  Q
     ||||| ||| |||||| |  |||||||| |||||||| || |||||||| ||||||||||    
T  6029155 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccaaacacaagata 6029095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 267
Target Start/End: Complemental strand, 7093850 - 7093646
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||  |||||||||| ||| ||||  |||| ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||| | || ||      
T  7093850 aaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgaatgaacgagg 7093751  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    | |||||||  ||||| |   |||  |||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  7093750 cctctttttgatgaaagacctgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 7093651  T
Q  263 gccgc 267  Q
     ||||    
T  7093650 cccgc 7093646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 63 - 245
Target Start/End: Complemental strand, 94802 - 94620
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||||||||||||||||||||||||||||| || || || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||     
T  94802 aaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgactttatctagcaattgattaaaagaag 94703  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgag 245  Q
    ||||||||| |||||| || ||| |||| |||||||| || |||||||||||| | |||||||||||||| ||||||| ||||    
T  94702 cttctttttggtgaaagatccgatcattcctttcaagccaaatcacccacacaaatgatagccaaataaggttaagagctgag 94620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 63 - 269
Target Start/End: Complemental strand, 23722 - 23515
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaa-caattgattaaaagaa 161  Q
    |||||||| |||||||||||||||||||||||| | || || |||||||||||  |||| || || |||||||||||||| || |||||||||||| |||    
T  23722 aaccaccacgaatggtaggagaaaacaaaactatgacgatttgctttcagccacgagtaagaatgaagcttaactttatcaaagcaattgattaaacgaa 23623  T
Q  162 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaa 261  Q
     ||||||||| |||||| ||  ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||  |||  |||| |||||||||    
T  23622 gcttctttttggtgaaagatttgagcattcctttcaagccaaatcacccacacacaagatagccaaataagattaagagcggagtttttgttgttagaaa 23523  T
Q  262 agccgcta 269  Q
    | ||||||    
T  23522 aaccgcta 23515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 62 - 234
Target Start/End: Original strand, 10436606 - 10436778
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 161  Q
    ||||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||||||||||||||| |||||||||||  |||    
T  10436606 taaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaa 10436705  T
Q  162 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 234  Q
     ||||| ||| |||||| |  |||||||| |||||||| || ||||||||||||||||||| ||| |||||||    
T  10436706 gcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 10436778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 62 - 234
Target Start/End: Complemental strand, 20406304 - 20406132
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 161  Q
    ||||||||| |||||||||||||||||||||||||| || || |||||||||||  |||| ||||| |||||||||||||||| |||||| ||||  |||    
T  20406304 taaccaccaagaatggtaggagaaaacaaaactaggacgatttgctttcagccactagtaagattgaagcttaactttatctagcaattgcttaatcgaa 20406205  T
Q  162 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagat 234  Q
     ||||| ||| |||||| || |||||||| |||||||| || ||||||||||||||||||| ||| |||||||    
T  20406204 gcttctgtttggtgaaaaatccgagcattcctttcaagtcaaatcacccacacacaagataaccatataagat 20406132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 15030006 - 15029831
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaa 161  Q
    ||||||||||| ||||||||||||| |||||||| |  | |||||||||| ||| || || ||||| |||||||||||||||| |||||||||||  |||    
T  15030006 taaccaccatgtatggtaggagaaaccaaaactatgatgattcgctttcaaccaccaataagattgaagcttaactttatctagcaattgattaatcgaa 15029907  T
Q  162 acttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaa 237  Q
     ||| | ||| |||||| |  | ||||||  ||||||| || ||||||||| || |||||| ||  ||||||||||    
T  15029906 gcttttgtttggtgaaaaacccaagcattcatttcaagccaaatcacccacgcataagataaccttataagattaa 15029831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 267
Target Start/End: Original strand, 53459119 - 53459287
Alignment:
Q  99 cggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaacttctttttagtgaaatatgcgagcatttctttcaa 198  Q
    ||||||||||||||||| ||||||||||| || |||| ||||||||  |||||||| || ||  | |||||||  ||||| |  ||||  |||||||| |    
T  53459119 cggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgattgaacgaggcctctttttgatgaaagacccgagtgtttctttcta 53459218  T
Q  199 ggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaagccgc 267  Q
      || ||||||||||||||||| || || || ||||||| ||||||||| ||||| || ||||| ||||    
T  53459219 tccaaatcacccacacacaagaaagtcatatgagattaaaagttgagcggttgcttttggaaaacccgc 53459287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 63 - 262
Target Start/End: Complemental strand, 9028 - 8829
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccatcagtatgattggagcttaactttatctaacaattgattaaaagaaa 162  Q
    ||||||||  |||||||||| ||| |||| ||||| ||||||||||||||||| ||||||||||| || |||| ||||||||  ||||||| ||| ||      
T  9028 aaccaccacaaatggtaggaaaaagcaaagctaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagtaattgatgaaacgagg 8929  T
Q  163 cttctttttagtgaaatatgcgagcatttctttcaaggcagatcacccacacacaagatagccaaataagattaagagttgagcgtttgctgttagaaaa 262  Q
    | ||||||   ||||| |  ||||| |||||||| |  || ||||||||||||||||| ||||| || ||||||| || |||||| ||||| || |||||    
T  8928 cctcttttagatgaaagacccgagcgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagctgagcggttgcttttggaaaa 8829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 97
Target Start/End: Complemental strand, 899 - 865
Alignment:
Q  63 aaccaccatgaatggtaggagaaaacaaaactagg 97  Q
    |||||||||||||||||||||||||||||||||||    
T  899 aaccaccatgaatggtaggagaaaacaaaactagg 865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 124365 - 124397
Alignment:
Q  62 taaccaccatgaatggtaggagaaaacaaaact 94  Q
    ||||||||| |||||||||||||||||||||||    
T  124365 taaccaccaagaatggtaggagaaaacaaaact 124397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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