View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4086_high_18 (Length: 267)
Name: NF4086_high_18
Description: NF4086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4086_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 39330347 - 39330468
Alignment:
| Q |
12 |
agaagcagaaggtattcagataaattcacataacgtgaaccacaattttatcattcatatcatatcaatggtaacaaatttctaagttcattgttggtgt |
111 |
Q |
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| T |
39330347 |
agaagcagaaggtattcagataaattcacataacgtgaaccacaattttatcattcctatcatatcaatggtaacaaatttctaagttcattgttggtgt |
39330446 |
T |
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| Q |
112 |
gataaatactatacacacctat |
133 |
Q |
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| T |
39330447 |
gataaatactatacacacctat |
39330468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 136 - 252
Target Start/End: Original strand, 39330504 - 39330620
Alignment:
| Q |
136 |
atgttaattctgttaaaatttaattcagctgaaaagaaatgtacgtagttggtggcattagtaatacacagtattggcttgcagaggtgtgtatttaatt |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39330504 |
atgttaattctgttaaaatttaattcagctgaaaagaaatgtacgtagttggtggcattagtaatacacagtattggcttgcagaggtgtgtatttaatt |
39330603 |
T |
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| Q |
236 |
atatagttgcaatattt |
252 |
Q |
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||||||||||||||||| |
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| T |
39330604 |
atatagttgcaatattt |
39330620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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