View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4086_high_19 (Length: 267)
Name: NF4086_high_19
Description: NF4086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4086_high_19 |
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| [»] scaffold0121 (2 HSPs) |
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Alignment Details
Target: scaffold0121 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 77 - 267
Target Start/End: Original strand, 27645 - 27835
Alignment:
| Q |
77 |
aatggaaccacatgatcaactacaagcacactttccaaatgctccttaaccttaatcaaaccctcactggggtccacacggtccaactcctcccgtcccg |
176 |
Q |
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| T |
27645 |
aatggaaccacatgatcaaccacaagcacactttccaaatgctccttaaccttaatcaaaccctcactggggtccacacggtccaactcctcccgtcccg |
27744 |
T |
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| Q |
177 |
gaaaaacgactagggaagcaatggtgaagcccttcgccctctccggcgatatattttcgccgtaagagacataacttactcctccaacact |
267 |
Q |
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| T |
27745 |
gaaaaacgactagggaagcaatggtgaagcccttcgccctctccggcgatatattttcgccgtaagagacataacttactcctccaacact |
27835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 27545 - 27609
Alignment:
| Q |
13 |
acttttccttgcaatcacatcaaaacaaaaaaccaatggccaataatttacatatcaccatcaaa |
77 |
Q |
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| T |
27545 |
acttttccttgcaatcacatcaaaacaaaaaaccaatgtccaataattaacatatcactatcaaa |
27609 |
T |
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