View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4086_high_21 (Length: 260)

Name: NF4086_high_21
Description: NF4086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4086_high_21
NF4086_high_21
[»] chr1 (3 HSPs)
chr1 (19-251)||(28341212-28341444)
chr1 (176-235)||(23233999-23234058)
chr1 (181-235)||(41998396-41998450)
[»] chr8 (4 HSPs)
chr8 (181-244)||(13105129-13105193)
chr8 (181-235)||(34873134-34873188)
chr8 (181-235)||(36035147-36035201)
chr8 (186-231)||(26261255-26261300)
[»] chr7 (1 HSPs)
chr7 (183-237)||(25672368-25672422)
[»] chr5 (4 HSPs)
chr5 (187-228)||(19647373-19647414)
chr5 (186-235)||(30208974-30209023)
chr5 (181-244)||(8241088-8241152)
chr5 (181-229)||(36422549-36422597)
[»] chr4 (2 HSPs)
chr4 (171-235)||(42381071-42381135)
chr4 (171-235)||(47929293-47929357)
[»] chr2 (1 HSPs)
chr2 (181-244)||(32854570-32854634)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 28341444 - 28341212
Alignment:
Q  19 catcaaacctaattttactatcaaccttatcatagcagaaacttctccttacatcaaccataataaccttcataccaatttttccattactaactttatc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28341444 catcaaacctaattttactatcaaccttatcatagcagaaacttctccttacatcaaccataataaccttcataccaatttttccattactaactttatc 28341345  T
Q  119 atcctgaaaggtttcaatgttaaaattaaacaccctatttcccacatcatcatagtagctatagcttacacattttaaatgtgaagaagtagggtacctg 218  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  28341344 atcttgaaaggtttcaatgttaaaattaaacaccctatttcccacatcatcatagtagctatagcttacacattttaaatgtggagaagtggggtacctg 28341245  T
Q  219 aggttcgaaccccgaccttgcatatagtattat 251  Q
    ||||| ||||||||||||| |||||||||||||    
T  28341244 aggtttgaaccccgaccttacatatagtattat 28341212  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 23234058 - 23233999
Alignment:
Q  176 gctatagcttacacattttaaatgtgaagaagtagggtacctgaggttcgaaccccgacc 235  Q
    |||| |||| ||||||| |||||||| |||||||||||  ||| ||||||||||||||||    
T  23234058 gctagagctcacacattataaatgtggagaagtagggtgtctggggttcgaaccccgacc 23233999  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 41998450 - 41998396
Alignment:
Q  181 agcttacacattttaaatgtgaagaagtagggtacctgaggttcgaaccccgacc 235  Q
    |||| |||||||||||||||| |||||||||||  ||  ||||||||||||||||    
T  41998450 agctcacacattttaaatgtggagaagtagggtgtctagggttcgaaccccgacc 41998396  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 13105193 - 13105129
Alignment:
Q  181 agcttacacattttaaatgtgaagaagtagggtacctgaggttcgaacccc-gaccttgcatata 244  Q
    |||| |||||||||||||||| |||||| ||||  |||||||||||||||| | |||||||||||    
T  13105193 agctcacacattttaaatgtggagaagtggggtgtctgaggttcgaaccccggcccttgcatata 13105129  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 34873188 - 34873134
Alignment:
Q  181 agcttacacattttaaatgtgaagaagtagggtacctgaggttcgaaccccgacc 235  Q
    |||| |||||||||||||||| |||||| ||||  | ||||||||||||||||||    
T  34873188 agctcacacattttaaatgtggagaagtggggtgtccgaggttcgaaccccgacc 34873134  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 36035147 - 36035201
Alignment:
Q  181 agcttacacattttaaatgtgaagaagtagggtacctgaggttcgaaccccgacc 235  Q
    |||| |||||||||||||||| |||||| ||||  | ||||||||||||||||||    
T  36035147 agctcacacattttaaatgtggagaagtggggtgtccgaggttcgaaccccgacc 36035201  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 26261255 - 26261300
Alignment:
Q  186 acacattttaaatgtgaagaagtagggtacctgaggttcgaacccc 231  Q
    |||||||||||| |||||||||| || || ||||||||||||||||    
T  26261255 acacattttaaacgtgaagaagtgggatatctgaggttcgaacccc 26261300  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 25672368 - 25672422
Alignment:
Q  183 cttacacattttaaatgtgaagaagtagggtacctgaggttcgaaccccgacctt 237  Q
    |||||||||| ||||||||||||||||||||  |||||||| |||| || |||||    
T  25672368 cttacacattataaatgtgaagaagtagggtgtctgaggtttgaactccaacctt 25672422  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 19647373 - 19647414
Alignment:
Q  187 cacattttaaatgtgaagaagtagggtacctgaggttcgaac 228  Q
    |||||||||||| ||||||||||||||| | |||||||||||    
T  19647373 cacattttaaatatgaagaagtagggtatccgaggttcgaac 19647414  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 30208974 - 30209023
Alignment:
Q  186 acacattttaaatgtgaagaagtagggtacctgaggttcgaaccccgacc 235  Q
    ||||||||||||| || |||||| |||| || ||||||||||||||||||    
T  30208974 acacattttaaatatggagaagtggggtgcccgaggttcgaaccccgacc 30209023  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 8241152 - 8241088
Alignment:
Q  181 agcttacacattttaaatgtgaagaagtagggtacctgaggttcgaaccccga-ccttgcatata 244  Q
    |||| |||||||||||||||| |||||| ||||  | | |||||||||||||| |||||||||||    
T  8241152 agctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccccgacccttgcatata 8241088  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 36422597 - 36422549
Alignment:
Q  181 agcttacacattttaaatgtgaagaagtagggtacctgaggttcgaacc 229  Q
    |||| |||||| || ||||||||||||||| ||| ||||||||||||||    
T  36422597 agctcacacatatttaatgtgaagaagtagtgtatctgaggttcgaacc 36422549  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 42381071 - 42381135
Alignment:
Q  171 tagtagctatagcttacacattttaaatgtgaagaagtagggtacctgaggttcgaaccccgacc 235  Q
    |||| |||| |||| ||||| ||||| |||| |||||| ||||  ||||||||||||||||||||    
T  42381071 tagtggctaaagctcacacaatttaattgtggagaagtggggtgtctgaggttcgaaccccgacc 42381135  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 47929357 - 47929293
Alignment:
Q  171 tagtagctatagcttacacattttaaatgtgaagaagtagggtacctgaggttcgaaccccgacc 235  Q
    |||| |||| |||| |||||||||||||||| |||||| ||||  | |||||||||||| |||||    
T  47929357 tagtggctagagctcacacattttaaatgtggagaagtggggtttccgaggttcgaacctcgacc 47929293  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 32854634 - 32854570
Alignment:
Q  181 agcttacacattttaaatgtgaagaagtagggtacctgaggttcgaacccc-gaccttgcatata 244  Q
    |||| |||||||||||||||| |||||||||||  | | |||||||||||| | |||||||||||    
T  32854634 agctcacacattttaaatgtggagaagtagggtgtccggggttcgaaccccggcccttgcatata 32854570  T

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