View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4086_high_30 (Length: 238)
Name: NF4086_high_30
Description: NF4086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4086_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 16906783 - 16906566
Alignment:
| Q |
4 |
ctaacaaagacgatcacattatcatctagtttccagaccttggttaaagttgtattgaagatattttgattaatgaaattatataagttttctcctatnn |
103 |
Q |
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| T |
16906783 |
ctaacaaaggcaatcacattatcatctagtttccagaccttggttaaagttgtattgaagatattttgattaatgaaattatataagttttctcctataa |
16906684 |
T |
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| Q |
104 |
nnnnntgtannnnnnnngtgaatagttaaatgtacactttattctttcgtaaatnnnnnnnnnnngtgcatttattctaatatcaaatcattatgtaagt |
203 |
Q |
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| T |
16906683 |
aaaaatgta-tttttttgtgaatagttaaatgtacactttattctttcgtaaataaaaaaaaaaagtgcatttattctaatatcaaatcattatgtaagt |
16906585 |
T |
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| Q |
204 |
agaaaagcaatcaagcaaa |
222 |
Q |
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||||||||||||||||||| |
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| T |
16906584 |
agaaaagcaatcaagcaaa |
16906566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 32663806 - 32663846
Alignment:
| Q |
53 |
ttgtattgaagatattttgattaatgaaattatataagttt |
93 |
Q |
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| T |
32663806 |
ttgtattgaaaatactttgattaatgaaatgatataagttt |
32663846 |
T |
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