View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4086_high_31 (Length: 237)
Name: NF4086_high_31
Description: NF4086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4086_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 29052599 - 29052380
Alignment:
| Q |
8 |
gtttctaaggaaaatagaagaagttaatgatgnnnnnnnngtatgtttggttaaagaaaaaccacaagagtgattcaaattcatttcttgatggaaagat |
107 |
Q |
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| T |
29052599 |
gtttctaaggtaaatagaagaagttaatgatgtttttcttgtatgtttggttaaagaaaaaccacaagagtgattcaaattcatttcttgatggaaagat |
29052500 |
T |
|
| Q |
108 |
nnnnnnnnnncaatgaacaattatagtgaaagaagtgtgtgtgttttggaatctttgtgttattatttagaaagattctttgccatatgaatgaagagaa |
207 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29052499 |
aaaaaaaa--caacgaacaattatagtgaaagaagtgtgtgtgttttggaatctttgtgttattatttagaaagattctttgccatatgaatgaagagaa |
29052402 |
T |
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| Q |
208 |
agagtggaagtaggtgatgatg |
229 |
Q |
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|||||||||||||||||||||| |
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| T |
29052401 |
agagtggaagtaggtgatgatg |
29052380 |
T |
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