View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4086_high_6 (Length: 401)
Name: NF4086_high_6
Description: NF4086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4086_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 912072 - 912446
Alignment:
| Q |
18 |
accttcacaaggaacatctattcttcaggcacagggagtcaaagacacgttatgcaatttgttaaccgtgtacgtgggtggatacacatacaacctacat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
912072 |
accttcacaaggaacatctattcttcaggcacagggagtcaaagacacgttatgcaatttgttaaccgtgtacgtgggtggatacacatacaacctacat |
912171 |
T |
|
| Q |
118 |
gtatttgattcaattcgttgacactattgacatattttgtatcaccgacacttcggatggaagacatgtccgaataccgagacttgcatctacgttcaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
912172 |
gtatttgattcaattcgttgacactattgacatattttgtatcaccgacacttcggatggaagacatgtccgaataccgagacttgcatctacgttcaat |
912271 |
T |
|
| Q |
218 |
taactcaatgtttcatgttcgatgtctgtatgaatcctacatggttcacatagtannnnnnnnnnnnnnnnnataaacaactaaattagtcactcataga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
912272 |
taactcaatgtttcatgttcgatgtctgtatcaatcctacatggttgacatagtgtttttattttattttttataaacaactaaattagtcactcataga |
912371 |
T |
|
| Q |
318 |
gcactcttaacataattaagatagtcataacataacataaatttggagtgtcttccaaatgtttcagattcttct |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
912372 |
gcactcttaacataattaagatagtcataacataacataaatttggagtgtcttccaaatgtttcagattcttct |
912446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University