View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4086_low_11 (Length: 355)
Name: NF4086_low_11
Description: NF4086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4086_low_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 6 - 355
Target Start/End: Original strand, 45370095 - 45370444
Alignment:
| Q |
6 |
agattattctgatgatgtgtgtattgaagactgttatataagcactggcgatgatctgattgccatcaaaagtgggtgggatgaatatggaattgcattc |
105 |
Q |
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| T |
45370095 |
agattcttctgatgatgtgtgtattgaagactgttatataagcaccggcgatgatctgattgccatcaaaagtgggtgggatgaatatggaattgcattc |
45370194 |
T |
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| Q |
106 |
ggtcgtcccagcacaaatattgtcatccacaggcttgttggaaaaactcacacaagcgcagggatagctataggaagtgagatgtcgggtggtgtatcag |
205 |
Q |
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| T |
45370195 |
ggtcgtcccagcacaaatattgtcatccacaggcttgttggaaaaactcacacaagcgcagggatagctattggaagtgagatgtcgggtggtgtatcag |
45370294 |
T |
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| Q |
206 |
atgttcgtgctgaagatattcacttttatgattcatatactgcaatcagaataaagacttcacctggaagaggtggttatgttagaaacatctacgtcac |
305 |
Q |
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| T |
45370295 |
atgttcgtgctgaagatattcacttttatgattcatatactgcaatcagaataaagacttcacctggaagaggtggttatgttagaaacatctacgtcac |
45370394 |
T |
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| Q |
306 |
taacatgaccttggctaatgttgatatcgctattcggttcaccggctcat |
355 |
Q |
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| T |
45370395 |
taacatgaccttggctaatgttgatatcgctattcggttcactggctcat |
45370444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 6 - 347
Target Start/End: Complemental strand, 38485644 - 38485306
Alignment:
| Q |
6 |
agattattctgatgatgtgtgtattgaagactgttatataagcactggcgatgatctgattgccatcaaaagtgggtgggatgaatatggaattgcattc |
105 |
Q |
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| T |
38485644 |
agattcttctgataatgtatgcattgaagactgttatataagcaccggcgatgatctaatttccatcaaaagtggatgggatgaatatggaatttcgttt |
38485545 |
T |
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| Q |
106 |
ggtcgtcccagcacaaatattgtcatccacaggcttgttggaaaaactcacacaagcgcagggatagctataggaagtgagatgtcgggtggtgtatcag |
205 |
Q |
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| T |
38485544 |
ggtcgaccaagtacaaatattagcatccacagacttaccgggaggac---aacgagtgccggaatcgctatcggaagtgagatgtctggaggtgtttcag |
38485448 |
T |
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| Q |
206 |
atgttcgtgctgaagatattcacttttatgattcatatactgcaatcagaataaagacttcacctggaagaggtggttatgttagaaacatctacgtcac |
305 |
Q |
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| T |
38485447 |
aagtttatgcagaagatatttacatttttgattcaaaaagtgcaatcagaataaagacttctcctggtaggggtggttatgttagaaatgtctatatctc |
38485348 |
T |
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| Q |
306 |
taacatgaccttggctaatgttgatatcgctattcggttcac |
347 |
Q |
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| T |
38485347 |
taacatgactttgattaatgtagatattgctattaggttcac |
38485306 |
T |
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