View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4086_low_12 (Length: 342)
Name: NF4086_low_12
Description: NF4086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4086_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 32305785 - 32305469
Alignment:
| Q |
11 |
cataggtgcataaataaagttaaaatgcatcagaattaagagatttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaaaagaac |
110 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32305785 |
cataggtgcataaataaagtgaaaatgcatcagaattaagagatttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaaaagaac |
32305686 |
T |
|
| Q |
111 |
ggaatctcttgcggcaagagcaagtatgtcagcacaagatacaacgccgggacatgcttgttccacctcctccttgatcaagtcaactttgtcaaaacct |
210 |
Q |
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||||||||||| | |||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32305685 |
ggaatctcttgtgacaagagcaagtatgtcagtacaagacacaacgccgggacatgcttgatccacctcctccttgatcaagtcaactttgtcaaaacct |
32305586 |
T |
|
| Q |
211 |
ttcaatgtttgatttggaatagcctgcttctcataggaaccgtttctatcaccattgtcctccaatagcaaggaatcatcacatccttgatttggcaaca |
310 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| ||||||||||||| |
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| T |
32305585 |
ttcaatgtttgatttggaatagcctgcttctcataggaaccgtttctatcaccatagtcttccaatagcaaggaagcatcacatccctgatttggcaaca |
32305486 |
T |
|
| Q |
311 |
ccaccacaagtagttag |
327 |
Q |
| |
|
||||||||||||||||| |
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| T |
32305485 |
ccaccacaagtagttag |
32305469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 314
Target Start/End: Complemental strand, 32309918 - 32309615
Alignment:
| Q |
11 |
cataggtgcataaataaagttaaaatgcatcagaattaagagatttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaaaagaac |
110 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32309918 |
cataggtgcataaataaagtgaaaatgcatcagaattaagagatttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaaaagaac |
32309819 |
T |
|
| Q |
111 |
ggaatctcttgcggcaagagcaagtatgtcagcacaagatacaacgccgggacatgcttgttccacctcctccttgatcaagtcaactttgtcaaaacct |
210 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32309818 |
ggaatctcttgcggcaagagcaagtatatcagcacaagacacaacgccgggacatgcttgttccacctcctccttaatcaagtcaactttgtcaaaacct |
32309719 |
T |
|
| Q |
211 |
ttcaatgtttgatttggaatagcctgcttctcataggaaccgtttctatcaccattgtcctccaatagcaaggaatcatcacatccttgatttggcaaca |
310 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| |||||| | |||| |
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| T |
32309718 |
ttcaatgtttgatttggaatagcctgcttctcataggaaccatttctatcaccattgtcttccaatagcaaggaagcatcacatccctgatttcgtaaca |
32309619 |
T |
|
| Q |
311 |
ccac |
314 |
Q |
| |
|
|||| |
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|
| T |
32309618 |
ccac |
32309615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 25 - 314
Target Start/End: Original strand, 32564930 - 32565219
Alignment:
| Q |
25 |
taaagttaaaatgcatcagaattaagagatttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaaaagaacggaatctcttgcgg |
124 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
32564930 |
taaagtgaaaatgcatcagaattaagagcattcaacagaagatatatgttataaacttataggtgcgaggaacataccaaaagaacggaatctcttgcgg |
32565029 |
T |
|
| Q |
125 |
caagagcaagtatgtcagcacaagatacaacgccgggacatgcttgttccacctcctccttgatcaagtcaactttgtcaaaacctttcaatgtttgatt |
224 |
Q |
| |
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|||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32565030 |
caagagcaagtatgtcagcacacgacacaatgccgggacatgcttgttccacctcctccttgatcaagtcaactttgtcaaaacctttcaatgtttgatt |
32565129 |
T |
|
| Q |
225 |
tggaatagcctgcttctcataggaaccgtttctatcaccattgtcctccaatagcaaggaatcatcacatccttgatttggcaacaccac |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| || |||||| | |||||||| |
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| T |
32565130 |
tggaatagcctgcttctcataggaaccgtttctatcaccattgtcttccaatagcaaggaagcatcacaaccctgatttagaaacaccac |
32565219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 91 - 314
Target Start/End: Original strand, 32814619 - 32814842
Alignment:
| Q |
91 |
taggaacaaaccaaaagaacggaatctcttgcggcaagagcaagtatgtcagcacaagatacaacgccgggacatgcttgttccacctcctccttgatca |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |
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| T |
32814619 |
taggaacaaaccaaaagaacggaatctcttacggcaagagcaagtatgtcagcacaagaaacaacgccgggacatgcttgctccacctcttccttgatca |
32814718 |
T |
|
| Q |
191 |
agtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcataggaaccgtttctatcaccattgtcctccaatagcaaggaatcatc |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
32814719 |
agtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcataggaaccgtttctatcaccattgtcttccaatagcaaggaagcatc |
32814818 |
T |
|
| Q |
291 |
acatccttgatttggcaacaccac |
314 |
Q |
| |
|
|||||| |||||| | |||||||| |
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|
| T |
32814819 |
acatccctgatttcgtaacaccac |
32814842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 88 - 314
Target Start/End: Complemental strand, 28221052 - 28220826
Alignment:
| Q |
88 |
tgttaggaacaaaccaaaagaacggaatctcttgcggcaagagcaagtatgtcagcacaagatacaacgccgggacatgcttgttccacctcctccttga |
187 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | |
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|
| T |
28221052 |
tgttaagaacaaaccaaaaaaacggaatctctcgctgcaagagcaagtatgtcagcacaagagacaacgccgggacatgcttgttcgacctcctccttaa |
28220953 |
T |
|
| Q |
188 |
tcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcataggaaccgtttctatcaccattgtcctccaatagcaaggaatc |
287 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||||| | |
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|
| T |
28220952 |
tcaagtcaactttgtcattacctttcaatgtttgatttggaatagcttgcttctcataggaactgtttctatcaccattgtcctccaacaacaaggaagc |
28220853 |
T |
|
| Q |
288 |
atcacatccttgatttggcaacaccac |
314 |
Q |
| |
|
|||||| || ||||| |||||||||| |
|
|
| T |
28220852 |
atcacaaccctgattcagcaacaccac |
28220826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 88 - 260
Target Start/End: Original strand, 28215204 - 28215376
Alignment:
| Q |
88 |
tgttaggaacaaaccaaaagaacggaatctcttgcggcaagagcaagtatgtcagcacaagatacaacgccgggacatgcttgttccacctcctccttga |
187 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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|
| T |
28215204 |
tgttaagaacaaaccaaaaaaacggaatctctcgctgcaagagcaagtatgtcagcacaagagacaacgccgggacatgcttgttccacctcctccttaa |
28215303 |
T |
|
| Q |
188 |
tcaagtcaactttgtcaaaacctttcaatgtttgatttggaatagcctgcttctcataggaaccgtttctatc |
260 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28215304 |
tcaagtcaactttgtcaaaaccttttaatgtttgatttggaatagcctgcttctcataggaaatgtttctatc |
28215376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 32787366 - 32787451
Alignment:
| Q |
19 |
cataaataaagttaaaatgcatcagaattaagagatttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaa |
104 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32787366 |
cataaataaagtgaaaatgcatcagaattaagagctttcaacagaagatatatgttataaacttataggtgttaggaacaaaccaa |
32787451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 32814570 - 32814610
Alignment:
| Q |
11 |
cataggtgcataaataaagttaaaatgcatcagaattaaga |
51 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
32814570 |
cataggtgcataaataaagtgaaaatgcatcataattaaga |
32814610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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