View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4086_low_13 (Length: 327)
Name: NF4086_low_13
Description: NF4086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4086_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 312
Target Start/End: Complemental strand, 10309322 - 10309022
Alignment:
| Q |
13 |
cacagacagacaattcaggtaacttcatcagttatggttttgcattaatatatacgacataaaaaatgtcttaatgttaaggaaacttcttttgctctga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10309322 |
cacagacagacaattcaggtaacttcatcagttatggttttgcattaatatatacgacataaaaaatgtcttaatgttaaggaaacttcttttgctctga |
10309223 |
T |
|
| Q |
113 |
tattacaattgacaagtaataaaattctggacttgttattcatctta-annnnnnnnnccttcagtatatactgccacacgaacatgaaaagctctcgca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10309222 |
tattacaattgacaagtaataaaattctggactttttattcatcttatttttttttttttttcagtatatactgccacacgaacatgaaaagctctcaca |
10309123 |
T |
|
| Q |
212 |
agttgaactgttggtagttgatgaagctgccgctattccactgcctgtggtgaagtctttgcttggcccatatttggtcttcctgtcttctactgttaat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10309122 |
agttgaactgttggtagttgatgaagctgccgctattccactgcctgtggtgaagtctttgcttggcccatatttggtcttcctgtcttctactgttaat |
10309023 |
T |
|
| Q |
312 |
g |
312 |
Q |
| |
|
| |
|
|
| T |
10309022 |
g |
10309022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 172 - 312
Target Start/End: Complemental strand, 38432172 - 38432032
Alignment:
| Q |
172 |
ttcagtatatactgccacacgaacatgaaaagctctcgcaagttgaactgttggtagttgatgaagctgccgctattccactgcctgtggtgaagtcttt |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| | ||||| ||||||||||| || |||||||||||||| ||||||||||| |
|
|
| T |
38432172 |
ttcagtatatactgccacacgaacatgaaaagctttcgcaagttgaattattggttgttgatgaagcagctgctattccactgccgacagtgaagtcttt |
38432073 |
T |
|
| Q |
272 |
gcttggcccatatttggtcttcctgtcttctactgttaatg |
312 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
38432072 |
gcttggcccatatctggtcttcctgtcttccactgttaatg |
38432032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 11191789 - 11191838
Alignment:
| Q |
199 |
aaaagctctcgcaagttgaactgttggtagttgatgaagctgccgctatt |
248 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||||||||||||| |||||| |
|
|
| T |
11191789 |
aaaagctctcgcaagttgaattattggtcgttgatgaagctgctgctatt |
11191838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University