View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4086_low_16 (Length: 310)
Name: NF4086_low_16
Description: NF4086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4086_low_16 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 115 - 310
Target Start/End: Original strand, 40843599 - 40843794
Alignment:
| Q |
115 |
acacttttaatttgaagtttctgtactatgtagatcaatagactcttatgctcatgaatacatccttaaacacaaaccttaaggaaagccaaaggtccat |
214 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40843599 |
acacttttaatttgaagtgtctgtactatgtagatcaatagactcttatgctcatgaatacatccttaaacacaaaccttaaggaaagccaaaggtccat |
40843698 |
T |
|
| Q |
215 |
ggcttttcagaattcctgcttcttcactatcaaccaaaaatgaagttgtaggagactccttaaatgttgtctgacctgaccaattcatggcatcaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40843699 |
ggcttttcagaattcctgcttcttcactatccaccaaaaatgaagttgtaggagactccttaaatgttgtctgacctgaccacttcatggcatcaa |
40843794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 100 - 310
Target Start/End: Original strand, 40838967 - 40839176
Alignment:
| Q |
100 |
tatgtcgaaaaccagaca--cttttaatttgaagtttctgtactatgtagatcaatagactcttatgctcatgaatacatccttaaacacaaaccttaag |
197 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||| ||||||| |||||| ||||| | ||||||||||||||||||||||||||| ||||| | |
|
|
| T |
40838967 |
tatgtcgaacaccagacaaacttttaatttgaagtgtctgtacattgtagacgaatagccgcttatgctcatgaatacatccttaaact---accttgcg |
40839063 |
T |
|
| Q |
198 |
gaaagccaaaggtccatggcttttcagaattcctgcttcttcactatcaaccaaaaatgaagttgtaggagactccttaaatgttgtctgacctgaccaa |
297 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
40839064 |
gaaagccaatggtccatggcttttcagaattcctgcttcttcactatcaaccaaaaacggagttgtaggagactccttatatgctgtctgacctgaccac |
40839163 |
T |
|
| Q |
298 |
ttcatggcatcaa |
310 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40839164 |
ttcatggcatcaa |
40839176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 170 - 308
Target Start/End: Original strand, 40849594 - 40849732
Alignment:
| Q |
170 |
gaatacatccttaaacacaaaccttaaggaaagccaaaggtccatggcttttcagaattcctgcttcttcactatcaaccaaaaatgaagttgtaggaga |
269 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| | |||||| |||||||||||| ||||||||||||||||||||||||| ||| || |||||||| |
|
|
| T |
40849594 |
gaatacatccttcaacacaaaccttgaggaaagcaagaggtccgtggcttttcagatctcctgcttcttcactatcaaccaaatatggggtcgtaggaga |
40849693 |
T |
|
| Q |
270 |
ctccttaaatgttgtctgacctgaccaattcatggcatc |
308 |
Q |
| |
|
| |||||||| | | ||||||||||| |||||||||| |
|
|
| T |
40849694 |
caccttaaattctttttgacctgaccacgtcatggcatc |
40849732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 40843505 - 40843564
Alignment:
| Q |
1 |
cctctttcacctattgttccnnnnnnntatatatagttaaatacaagcgaaccaatagct |
60 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40843505 |
cctctttcacctattgttccaaaaaaaaatatatagttaaatacaagcgaaccaatagct |
40843564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University