View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4086_low_27 (Length: 249)
Name: NF4086_low_27
Description: NF4086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4086_low_27 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 40843254 - 40843485
Alignment:
| Q |
18 |
atagcatgacctaatgaattgtttgagaatttaagagatagtagaaggcaaaaatgccaagaatttgagagtgacttggggaaaaacaaatgagttttat |
117 |
Q |
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| T |
40843254 |
atagcatgacctaatgaattgtttgagaatttaagagatagtagaaggcaaaaatgccaagaatttgagagtgacttggggaaaaacaaatgagttttat |
40843353 |
T |
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| Q |
118 |
tcatcattccaatgtttacaaggaaatgccattaatatttatacaacaagaatgtgattttggttttgtgctgagtgcagtttcccttgcatccaatctt |
217 |
Q |
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| T |
40843354 |
tcatcattccaatgtttacaaggaaatgccattaatgtttatacaacaagaatgtgattttggttttgtgctgagtgcagtttcccttgcatccaatctt |
40843453 |
T |
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| Q |
218 |
gtaacatctgaagtgcaacttttggttgatcc |
249 |
Q |
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| T |
40843454 |
gtaacatctgaagtgcaacttttggttgatcc |
40843485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 40838534 - 40838771
Alignment:
| Q |
18 |
atagcatgacctaatgaattgtttgagaatttaagagatagtagaaggcaaaaatgccaagaatttgagagtgacttggggaaaaacaaatgagttttat |
117 |
Q |
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| T |
40838534 |
atagcatgagctaatggattgtt-gagaatttaagagataatagaag-caaaaatgccaagaatttgagagtggctcagggaaaaacaaatgtgttttat |
40838631 |
T |
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| Q |
118 |
tcatcattccaatgtttacaaggaaatgccattaatatttatacaacaagaatgtgattttggttttgtgctgagtg--------cagtttcccttgcat |
209 |
Q |
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| T |
40838632 |
tcattattccaatgttcacaaggaaatgacattaatgtttagacaacaagaatgtgattttggttttgtgctgagtgcatcatatcagtttcccttgcat |
40838731 |
T |
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| Q |
210 |
ccaatcttgtaacatctgaagtgcaacttttggttgatcc |
249 |
Q |
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| T |
40838732 |
ccattcttgtaacatctgaagtgcaacttttggttgatcc |
40838771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 40849090 - 40849215
Alignment:
| Q |
40 |
ttgagaatttaagagatagtagaaggcaaaaatgccaagaatttgagagtgacttggggaaaaacaaatgagttttattcatcattccaatgtttacaag |
139 |
Q |
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| T |
40849090 |
ttgagaatttaagaaaaagtaggag-caaaaatgccaaaaaattgag--tgacttggggaaaaagaaatgtattttattcatccttccaatgttcacaag |
40849186 |
T |
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| Q |
140 |
gaaatgccattaatatttatacaacaaga |
168 |
Q |
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| T |
40849187 |
gaaatgccattaatgtgtatacaataaga |
40849215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 40849288 - 40849342
Alignment:
| Q |
195 |
cagtttcccttgcatccaatcttgtaacatctgaagtgcaacttttggttgatcc |
249 |
Q |
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| T |
40849288 |
cagtttcccttgcatccaatcttttaacatctgaagtgcagcttttggttgatcc |
40849342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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