View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4086_low_28 (Length: 249)
Name: NF4086_low_28
Description: NF4086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4086_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 34976879 - 34977121
Alignment:
| Q |
1 |
tacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagcttgttttatgt |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976879 |
tacaaacattgaccggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagcttgttttatgt |
34976978 |
T |
|
| Q |
101 |
ggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaatttatacattgtgtcaggaatgggagacaatatagatttt |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976979 |
aagggcagaacattcaagcgctctatattcctcactgaatgagatgaaacacttggagaatttatacattgtgtcaggaatgggagacaatatagatttt |
34977078 |
T |
|
| Q |
201 |
gatgtcattgatttagatttggtttcgcctccacctatgcttc |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34977079 |
gatgtcattgatttagatttggtttcgcctccacctatgcttc |
34977121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 34983926 - 34984168
Alignment:
| Q |
1 |
tacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagcttgttttatgt |
100 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||| |
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| T |
34983926 |
tacaaacattgagtggagtgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaagacagttaaggaagttgaccttgttttatgc |
34984025 |
T |
|
| Q |
101 |
ggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaatttatacattgtgtcaggaatgggagacaatatagatttt |
200 |
Q |
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| T |
34984026 |
gagggcagaacattttagcgctttatcttcctcattgaatgagatgcgacacttagaaaaattatgcattgtgtcaggatgggaagatggttcttattat |
34984125 |
T |
|
| Q |
201 |
gatgtcattgatttagatttggtttcgcctccacctatgcttc |
243 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34984126 |
gatgtcattgatttacatttggtttcgcctccacctatgcttc |
34984168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 2304446 - 2304204
Alignment:
| Q |
1 |
tacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagcttgttttatgt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | || |||||||||||||| ||||||||| |||| |
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| T |
2304446 |
tacaaacattgactggaatgaaaattggtaagggtggaatagagttaattaaagagttgggaaagctaaggcagttaaggaagtttagcttgtttgatgt |
2304347 |
T |
|
| Q |
101 |
ggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaatttatacattgtgtcaggaatgggagacaatatagatttt |
200 |
Q |
| |
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| | ||||||||||| |||| |||||||||| |||||||||||||||||| |||||| |||| |||| ||||| ||| ||||| || | |||| |
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| T |
2304346 |
gaggctagaacattcaatcgctttatcttcctcgttgaatgagatgcgacactcggagaaattatgcattatgtcaagaagcggagatgatggggttttt |
2304247 |
T |
|
| Q |
201 |
gatgtcattgatttagatttggtttcgcctccacctatgcttc |
243 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
2304246 |
gatgtcattgatttacatttggtttcgcttccacctatgcttc |
2304204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 34990755 - 34990930
Alignment:
| Q |
1 |
tacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagcttgttttatgt |
100 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |||||||||||| ||||| |||||||||||| | || | ||||||||||||||||||| | |||| |
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| T |
34990755 |
tacaaacgttgagtggagtgaaaattggtaagggtggaatagagttgattaaggagttgggaaagctaaggcggttaaggaagttgagcttgaatgatgt |
34990854 |
T |
|
| Q |
101 |
ggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaatttatacattgtgtca |
176 |
Q |
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| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
34990855 |
gagggcaagacattcaagcgctttatcttcctcactgaatgagatgcgacacttggagaaattacgcattgtgtca |
34990930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 40581436 - 40581678
Alignment:
| Q |
1 |
tacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagcttgttttatgt |
100 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| ||||| | || |||||||||||||||| ||||||||||| |
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| T |
40581436 |
tacaaacattgagtgcagtgaaaattggtaagggtggaatagagttaattaaagagttgagaaagctaaggcagttaaggaagttgaacttgttttatgc |
40581535 |
T |
|
| Q |
101 |
ggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaatttatacattgtgtcaggaatgggagacaatatagatttt |
200 |
Q |
| |
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| ||||||||||| |||||| ||||||||||| |||||||||||||||||||| | || ||| |||||| |||||| |||| | || | | || | |
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| T |
40581536 |
gagggcagaacattttagcgctttatcttcctcattgaatgagatgcgacacttgaaaaaattaagcattgtatcaggatggggacaagattttgtttat |
40581635 |
T |
|
| Q |
201 |
gatgtcattgatttagatttggtttcgcctccacctatgcttc |
243 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40581636 |
gatgtcattgatttacatttggtttcgcctccacctatgcttc |
40581678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 160
Target Start/End: Complemental strand, 22619818 - 22619689
Alignment:
| Q |
31 |
aggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatcttc |
130 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| || ||||||||||| ||| | ||| || ||| ||||||| ||||||| ||||||| |
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| T |
22619818 |
aggatggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatcttc |
22619719 |
T |
|
| Q |
131 |
ctcactgaatgagatgcgacacttggagaa |
160 |
Q |
| |
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| | |||||||| |||||||||||||||| |
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|
| T |
22619718 |
cgtattgaatgagctgcgacacttggagaa |
22619689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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