View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4086_low_30 (Length: 242)
Name: NF4086_low_30
Description: NF4086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4086_low_30 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 29303926 - 29303700
Alignment:
| Q |
17 |
actatgtagtacattgtttcgagaagcatgtatgtgtttctagacaggcactgtgcttttcttttt-cccttcatttttgttatcatgcaagctagggta |
115 |
Q |
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| T |
29303926 |
actatgtagtacattgtttcgagaagcatgtatgtgtttctagacaggcactgtgctttttttttttcccttcatttttgttatcatgcgagctagggta |
29303827 |
T |
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| Q |
116 |
aatcgcgatcaaggatttgaatcaggtctgtattcgtattgcgtcgtgatccgtaatattatgaaaaattgcagacttgcaatgtggctgtaggaacaag |
215 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29303826 |
aatcgcgatcaaggatttgaatcaggtctgtagtcgtattgcgtcgtgatccgtaatattatgaaaaattgcagacttgcaatgtggctgtaggaacaag |
29303727 |
T |
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| Q |
216 |
gaaaacaattacattgcggccgcaaat |
242 |
Q |
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| T |
29303726 |
gaaaacaattacattgcggccgcaaat |
29303700 |
T |
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