View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4086_low_4 (Length: 557)

Name: NF4086_low_4
Description: NF4086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4086_low_4
NF4086_low_4
[»] chr5 (5 HSPs)
chr5 (286-525)||(4126784-4127020)
chr5 (380-525)||(509256-509402)
chr5 (287-369)||(4126293-4126374)
chr5 (287-367)||(4560037-4560116)
chr5 (287-333)||(509432-509478)
[»] chr3 (2 HSPs)
chr3 (303-525)||(27002227-27002451)
chr3 (288-369)||(27001735-27001816)
[»] chr1 (3 HSPs)
chr1 (56-187)||(14924475-14924606)
chr1 (479-525)||(44005771-44005817)
chr1 (288-369)||(44006207-44006288)
[»] chr7 (1 HSPs)
chr7 (292-367)||(3777840-3777915)
[»] chr8 (1 HSPs)
chr8 (288-365)||(17521882-17521959)


Alignment Details
Target: chr5 (Bit Score: 124; Significance: 2e-63; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 286 - 525
Target Start/End: Complemental strand, 4127020 - 4126784
Alignment:
Q  286 tattgcacaggataagcagtaattaatgcactcactattatagattttctcaaatcttattaatgaccaaatcttgaaaattgannnnnnnnnncttctc 385  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||          | |||     
T  4127020 tattgcacaggataagcagtaattaatgcacccactattataggttttttcaaatcttattaatgaccaaatcttaaaaattgatttttttt--cctctg 4126923  T
Q  386 tcatctgttactacttcttcacgtttgtttttattcttgttccnnnnnnnccattgttacattccaattcatttaacttgctgcttatttaaatttctct 485  Q
    |||| ||||||||||||||||| ||||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4126922 tcatgtgttactacttcttcacctttgtttttattcttgttcctttttttc-attgttacattccaattcatttaacttgctgcttatttaaatttctct 4126824  T
Q  486 tgttcctacacgtaagttcctaataatattgctgctgcca 525  Q
    |||| || ||||||||||||||| ||||||  ||||||||    
T  4126823 tgttgctgcacgtaagttcctaacaatatttttgctgcca 4126784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 380 - 525
Target Start/End: Complemental strand, 509402 - 509256
Alignment:
Q  380 cttctctcatctgttactacttcttcacgtttgtttttattcttgttccnnnnnnn--ccattgttacattccaattcatttaacttgctgcttatttaa 477  Q
    |||||||||| ||||||  ||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||    
T  509402 cttctctcat-tgttaccgcttcttcacgtttgtttttattcttgttcctttttttttccattgttacattccaattcatttaacttgctgcttatttaa 509304  T
Q  478 atttctcttgttcctacacgtaagttcctaataatattgctgctgcca 525  Q
    ||||||||| ||||| ||||||||||||||||||||||| ||||||||    
T  509303 atttctcttattcctgcacgtaagttcctaataatattggtgctgcca 509256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 369
Target Start/End: Original strand, 4126293 - 4126374
Alignment:
Q  287 attgcacaggataagcagtaattaatgcactcactattatagattttctcaaatcttattaatgaccaaatcttgaaaattga 369  Q
    |||||||||||||| |||||||||| |||| |||||||||||||||   |||||||||||||||| |||||||| ||||||||    
T  4126293 attgcacaggataaacagtaattaaagcacccactattatagatttctccaaatcttattaatgagcaaatctt-aaaattga 4126374  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 287 - 367
Target Start/End: Original strand, 4560037 - 4560116
Alignment:
Q  287 attgcacaggataagcagtaattaatgcactcactattatagattttctc-aaatcttattaatgaccaaatcttgaaaatt 367  Q
    ||||||| |||||| ||||||||||||||| ||||||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  4560037 attgcacgggataa-cagtaattaatgcacccactattataggttt-ctctaaatcttattaatgaccaaatcttgaaaatt 4560116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 509478 - 509432
Alignment:
Q  287 attgcacaggataagcagtaattaatgcactcactattatagatttt 333  Q
    |||||| ||||||||||||||||||||||| |||| |||||| ||||    
T  509478 attgcaaaggataagcagtaattaatgcacccactgttataggtttt 509432  T

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Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 303 - 525
Target Start/End: Complemental strand, 27002451 - 27002227
Alignment:
Q  303 agtaattaatgcactcactattatagattttctcaaatcttattaatgaccaaatcttgaaaattgannnnnnnnnncttctctcatctgttactacttc 402  Q
    |||||||||||||| ||||||||||| ||||  ||||| ||||||||||||||||||||||||||||          |||||||||||||||||||| ||    
T  27002451 agtaattaatgcacccactattataggtttttccaaattttattaatgaccaaatcttgaaaattgattttttttt-cttctctcatctgttactacctc 27002353  T
Q  403 ttcacgtttgtttttattcttgttccnnnnnnn---ccattgttacattccaattcatttaacttgctgcttatttaaatttctcttgttcctacacgta 499  Q
    |||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||    
T  27002352 ttcacgtttgtttttattcttgttctttttttttttccattgttacattccaattcatttaacttgctgcgtatttaattttctcttgttcctgcacgta 27002253  T
Q  500 agttcctaataatattgctgctgcca 525  Q
    ||||||| ||||||||||||||||||    
T  27002252 agttcctgataatattgctgctgcca 27002227  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 369
Target Start/End: Original strand, 27001735 - 27001816
Alignment:
Q  288 ttgcacaggataagcagtaattaatgcactcactattatagattttctcaaatcttattaatgaccaaatcttgaaaattga 369  Q
    ||||| || ||||||||||||||| |||| |||||||||||||||   |||||||||||||||| |||||||||||||||||    
T  27001735 ttgcatagaataagcagtaattaaagcacccactattatagatttctccaaatcttattaatgagcaaatcttgaaaattga 27001816  T

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Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 14924606 - 14924475
Alignment:
Q  56 gattgcctcctaacaagcgtttctttaccatcactaaattgacaagtgacaaagtcaaggatcatgtaaaatgacatgaaatctcactcttgtcgagagg 155  Q
    ||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||    
T  14924606 gattgcctcctaacaagcgtttctttaccgtcactaggttgacaagtgacaaagtcaaggatcatgtaaaatgacaggaaatctcacttttgtcaagtgg 14924507  T
Q  156 aaaaaatatggtggtgcaaatagggtgagtcg 187  Q
    ||| |||||| ||| |||||||||||||||||    
T  14924506 aaacaatatgatggagcaaatagggtgagtcg 14924475  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 479 - 525
Target Start/End: Original strand, 44005771 - 44005817
Alignment:
Q  479 tttctcttgttcctacacgtaagttcctaataatattgctgctgcca 525  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||    
T  44005771 tttctcttgtccctgcacgtaagttcctaataatattgctgctgcca 44005817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 288 - 369
Target Start/End: Complemental strand, 44006288 - 44006207
Alignment:
Q  288 ttgcacaggataagcagtaattaatgcactcactattatagattttct-caaatcttattaatgaccaaatcttgaaaattga 369  Q
    ||||||| |||||||||||||||| |||| |||||||||| | ||||| ||||||||||| | || |||||||||||||||||    
T  44006288 ttgcacaagataagcagtaattaaagcacccactattata-agtttctccaaatcttattcaggagcaaatcttgaaaattga 44006207  T

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Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 292 - 367
Target Start/End: Complemental strand, 3777915 - 3777840
Alignment:
Q  292 acaggataagcagtaattaatgcactcactattatagattttctcaaatcttattaatgaccaaatcttgaaaatt 367  Q
    ||||||||||||||||||||||||| ||||||| ||| |||   ||||||||| ||||||||||||||| ||||||    
T  3777915 acaggataagcagtaattaatgcacccactattgtaggtttctccaaatcttaataatgaccaaatcttaaaaatt 3777840  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 365
Target Start/End: Complemental strand, 17521959 - 17521882
Alignment:
Q  288 ttgcacaggataagcagtaattaatgcactcactattatagattttctcaaatcttattaatgaccaaatcttgaaaa 365  Q
    ||||| |||||||||||||||||| |||| ||||||||||| |||   ||||| |||||||||| ||||| |||||||    
T  17521959 ttgcagaggataagcagtaattaaagcacccactattataggtttctccaaattttattaatgagcaaattttgaaaa 17521882  T

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