View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4086_low_41 (Length: 221)
Name: NF4086_low_41
Description: NF4086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4086_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 53600055 - 53599968
Alignment:
| Q |
113 |
gggaccaaatctacaacacaataattggtaatttggtaccacaacaaaggagtggaaatttctattttgttaaaccatcactgggaga |
200 |
Q |
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| T |
53600055 |
gggaccaaatctacaacacaataattggtaatttggtaccacaacaaaggagtggaaatttctattttgttaaaccatcactgggaga |
53599968 |
T |
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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 57
Target Start/End: Complemental strand, 53600137 - 53600108
Alignment:
| Q |
28 |
cacagacaaacgtatgttaataactcaaag |
57 |
Q |
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| T |
53600137 |
cacagacaaacgtatgttaataactcaaag |
53600108 |
T |
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