View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4086_low_6 (Length: 431)
Name: NF4086_low_6
Description: NF4086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4086_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 134 - 413
Target Start/End: Original strand, 22219030 - 22219309
Alignment:
| Q |
134 |
actaataggtaatgatagacatatcatagcaaaattaaacacattcattagaggaccttaaggattctgttccattttcaatattaccaatcttcacact |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22219030 |
actaataggtaatgatagacatatcatagcaaaattaaacatattcattagaggaccttaaggattctgttccattttcaatattacgaatcttcacact |
22219129 |
T |
|
| Q |
234 |
tgaggttttcaaacaagagagcaaaccttttagaaagaaagagtgtacatggctgaacgattagcaagaaacttcacatgcttgttatcttggtatgttt |
333 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22219130 |
tgaggttttcaaacaagagagctaaccttttagaaagaaagagtgtacatggctgaacgattagcaagaaacttcacatgcttgttatctcggtatgttt |
22219229 |
T |
|
| Q |
334 |
tggcccatgcattcatcacataaggatcattcactacaaaagtttaactaatccaatctcacgaaactactcatctagct |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22219230 |
tggcccatgcattcatcacataaggatcattcactacaaaagtttaactaatccaatctcataaaactactcatctagct |
22219309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 33103307 - 33103359
Alignment:
| Q |
342 |
gcattcatcacataaggatcattcactacaaaagtttaactaatccaatctca |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
33103307 |
gcattcatcacataaggatcattcactacaaaagtttaattaatctaatctca |
33103359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 374
Target Start/End: Original strand, 33125804 - 33125895
Alignment:
| Q |
283 |
tggctgaacgattagcaagaaacttcacatgcttgttatcttggtatgttttggcccatgcattcatcacataaggatcattcactacaaaa |
374 |
Q |
| |
|
|||| |||| || |||||| ||||| ||||||||||| ||| || |||| |||||||||| ||||| |||| | |||||||| ||||||||| |
|
|
| T |
33125804 |
tggcagaaccatcagcaaggaacttgacatgcttgttctctgggaatgtcttggcccatgaattcagcacaaatggatcattgactacaaaa |
33125895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University