View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4086_low_8 (Length: 385)
Name: NF4086_low_8
Description: NF4086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4086_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 29303238 - 29303617
Alignment:
| Q |
1 |
gaatcatatataaattaaattgtaagcatcacgaataacaggatatgaatgaaatcagcaaaaataataataattttctagcattgtgtgtactcagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29303238 |
gaatcatatataaattaaattgtaagcatcacgaataacaggatatgaatgaaatcagcaaaaataataataattttctagcattgtgtgtactcagaag |
29303337 |
T |
|
| Q |
101 |
aaacttaattgcataatggtcaagattgnnnnnnnatggttcaagcgtccattat-----aagtatccgttaataaataccgttctgatgacgcaattat |
195 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29303338 |
aaacttagttgcgtaatggtcaagattgtttttttatggttcaagcgtccattatggttcaagtatccgttaataaataccgttctgatgacgcgattat |
29303437 |
T |
|
| Q |
196 |
aagtatccaggcaagagttacaaactgagtatctgatatctcgtataatccgttagattttaatttgttaaatattactgattgataagtgaaagtccac |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29303438 |
aagtatccaggcaagagttacaaactgagtatctgatatctcgtataatccgttagattttaatttgttaaatattactgattgataagtgaaagtccac |
29303537 |
T |
|
| Q |
296 |
atagaatgaaattatttaaactcgggggtgtcattaaaatttaggcttttgtaagagaaactaaaatacaaatgcaaaac |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29303538 |
atagaatgaaattatttaaactcgggggtgtcattaaaatttaggcttgtgtaagagaaactaaaatacaaatgcaaaac |
29303617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 160 - 296
Target Start/End: Original strand, 29320745 - 29320881
Alignment:
| Q |
160 |
atccgttaataaataccgttctgatgacgcaattataagtatccaggcaagagttacaaactgagtatctgatatctcgtataatccgttagattttaat |
259 |
Q |
| |
|
|||| |||||||||||| |||| || || ||| || ||||| ||| || |||||||| | |||||||||||| || ||||||| |||||||||||| |
|
|
| T |
29320745 |
atccattaataaataccattctaataacacaaatacaagtaaccaacaaacagttacaagccgagtatctgataacttacataatccattagattttaat |
29320844 |
T |
|
| Q |
260 |
ttgttaaatattactgattgataagtgaaagtccaca |
296 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29320845 |
ttgttaaatattattgattgataagtgaaagtccaca |
29320881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 373
Target Start/End: Original strand, 29331822 - 29331957
Alignment:
| Q |
238 |
gtataatccgttagattttaatttgttaaatattactgattgataagtgaaagtccacatagaatgaaattatttaaactcgggggtgtcattaaaattt |
337 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||| || |||||||| || |||||| | || | ||||| |||| |||||||| ||||||||||||||| |
|
|
| T |
29331822 |
gtataatccattagacttttatttgttaaatactattgattgatcagagaaagtttatatgggttgaaactattcaaactcggcagtgtcattaaaattt |
29331921 |
T |
|
| Q |
338 |
aggcttttgtaagagaaactaaaatacaaatgcaaa |
373 |
Q |
| |
|
|||| | |||||||||||| |||| |||||| |||| |
|
|
| T |
29331922 |
aggcctgtgtaagagaaaccaaaagacaaatacaaa |
29331957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 29320881 - 29320938
Alignment:
| Q |
314 |
aactcgggggtgtcattaaaatttaggcttttgtaagagaaactaaaatacaaatgca |
371 |
Q |
| |
|
||||||| ||||||||||| ||||||| || |||||||||||| |||||||||||||| |
|
|
| T |
29320881 |
aactcggtggtgtcattaagatttaggtttctgtaagagaaaccaaaatacaaatgca |
29320938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University