View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4086_low_9 (Length: 370)
Name: NF4086_low_9
Description: NF4086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4086_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 10 - 353
Target Start/End: Complemental strand, 18036461 - 18036118
Alignment:
| Q |
10 |
aagaatattacaacgatttcaaacagagtagaaaacactgttttcaaatttgattctcaaaaggccatagttacataaaactcatcatttataaatatct |
109 |
Q |
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| T |
18036461 |
aagaatattacaacgatttcaaacagagtagaaaacactgttgtcaaatttgattatcaaaaggccatagtcacataaaactcatcatttataaatatct |
18036362 |
T |
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| Q |
110 |
tgaaatgaactcataatcaaggctaatcatttaaacaaatatggatttttattcattcacaaaacttagatacaatttgatttttctttcaaaaagaaca |
209 |
Q |
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| T |
18036361 |
tgaaatgaactcataatcaaggctaatcatttaaacaaatatggatttttattcattcacaaaacttagatacaatttgatttttctttcaaaaagaaca |
18036262 |
T |
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| Q |
210 |
agttataaattgattctatttatcaataaagaaacttttccattggtattacctattaaagcatggatcacaaactaacaatacgaaataactggattct |
309 |
Q |
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| T |
18036261 |
aattataaattgattctatttatcaataaagaaacttttccattggtattacctattaaagcatggatcacaaactaacaataggaaataactggattct |
18036162 |
T |
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| Q |
310 |
ctcaaacacatacacacaaacaacaaaagagtgatgatctcact |
353 |
Q |
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| T |
18036161 |
cttaaacacatacacacaaacaacaaaagagtgatgatctcact |
18036118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 348
Target Start/End: Complemental strand, 18021966 - 18021631
Alignment:
| Q |
10 |
aagaatattacaacgatttcaaacagagtagaaaacactgttttcaaatttgattctcaaaaggccatagttacataaaactcatcatttataaatatct |
109 |
Q |
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|||||||||| |||||||||||| | ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18021966 |
aagaatattagaacgatttcaaataaagtagaatacattgttt-caaatttgattctcaaaaggccatagttacataaaactcatcatttatagatatct |
18021868 |
T |
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| Q |
110 |
tgaaatgaactcataatcaaggctaatcatttaaacaaatatggatttttattcattcacaaaacttagatacaatttgatttttctttcaaaaagaaca |
209 |
Q |
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| T |
18021867 |
tgaaatcaactcataatcaaggctaatcatttaaacaattaaggatttttattctttcacaaaatttagatacaatttgatttttcttgcaaaaagtaca |
18021768 |
T |
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| Q |
210 |
agttataaattgattctatttatcaataaagaaacttttccattggtattacctattaaagcatggatcacaaactaacaatacgaaataactggattct |
309 |
Q |
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| T |
18021767 |
aattataaaatgattctatttatcaataaagacacttttccattggtattacctat--aagcatggatcacaaactaacaataggaaataacttaattct |
18021670 |
T |
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| Q |
310 |
ctcaaacacatacacacaaacaacaaaagagtgatgatc |
348 |
Q |
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| T |
18021669 |
ctcaaacacatacacacaaacaacaaaagagtgatgatc |
18021631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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