View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4087_high_11 (Length: 362)
Name: NF4087_high_11
Description: NF4087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4087_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 358
Target Start/End: Complemental strand, 26044520 - 26044181
Alignment:
| Q |
19 |
caaatgcctcagagatgaaatcagtagcaattctaccatttgagaatctaccagtagcatcaccatttggaaaatctttaccataaggtggaaaattgct |
118 |
Q |
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| T |
26044520 |
caaatgcctcagagatgaaatcagtagcaattctaccatttgagaatataccagtagcatcaccatttggaaaatctttaccataaggtggaaaattgct |
26044421 |
T |
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| Q |
119 |
cctagctaatgttggaatgaaattattgttacctgaatcaacagaagaatctccaaaaacaattatagctggaacttttccactgtttgatattgaaaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26044420 |
cctagctaatgttggaatgaaattattgttacctgaatcaacagaagaatctccaaaaacaattatagctggaacttttccactgtttgatattgaaaca |
26044321 |
T |
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| Q |
219 |
tgcaacaaaatttgaataaagaagagccataaaatgtacattttcatcatttttcacctggtttcactaaattgattatgcaagtgattgcagagaatga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26044320 |
tgcaacaaaatttgaataaagaagagccataaaatgtacattttcatcatttttcacctggtttcactaaattgattatgcaagtgattgcagagaatga |
26044221 |
T |
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| Q |
319 |
tataaagagattgattgtttgtatgagtcctatgctacta |
358 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |
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| T |
26044220 |
tataaagagattgattgtttgtatgagtcctatgatacta |
26044181 |
T |
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