View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4087_high_12 (Length: 306)
Name: NF4087_high_12
Description: NF4087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4087_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 218178 - 218449
Alignment:
| Q |
19 |
tatagtcattttactaattctctcaataacaacatgatattgtaggcatatacaatttgtattctttagcaagaagagattcaaaacttttatctaatca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
218178 |
tatagtcattttactaattctctcaataacaacatgatattgtaggcatatacaatttgtattctttagcaagaagagattctaaacttttatctaatca |
218277 |
T |
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| Q |
119 |
aaatctaaaatataaaaacttgtcggatttcatcatagcatacgtcatttaaaattaccatttatcatgtcatgactcaaaagatcaaattgcattccta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
218278 |
aaatctaaaatataaaaacttgtcggatttcatcatagcatacgtcatttaaaattaccatttatcatgtcatgactcaaaagatcaaattgtattccta |
218377 |
T |
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| Q |
219 |
atttggcaatgttccacatgctagaagttagtatcataaatatataaaaataaatacaatgattatcttcat |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
218378 |
atttggcaatgttccacatgctagaagttagtatcataaatatataaaaataaatacaatgattatcttcat |
218449 |
T |
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