View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4087_high_13 (Length: 285)
Name: NF4087_high_13
Description: NF4087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4087_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 35526275 - 35526528
Alignment:
| Q |
19 |
ataaaatcatttacaattcattacatcaaaataatggctctagtgccgtaaatacatatgtttgattcacatcaagggtttaaattacttaaagtttttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
35526275 |
ataaaatcatttacaattcattacatcaaaataatggctctagtgccgtaaatacatatgcttgattcacatcaagggtttaaattacttaaa-tttttt |
35526373 |
T |
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| Q |
119 |
atacaaaatactgatcaacttacttaaagttttaattctcacagtagaatgctcttcttgaagttctaattctcataaagcatacctgatggtgcagaga |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35526374 |
atacaaaatactga-------acttaaagttttaattctcacagtagaatgctcttcttgaagttctaattctcataaagcatacctgatggtgcagaga |
35526466 |
T |
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| Q |
219 |
atgaagaaagcatagctannnnnnncttctcaaaactgaacttgcttatctcctttgcttct |
280 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||||||| ||| |||| |
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| T |
35526467 |
atgaagaaatcatagctatttttttcttctcaaaactgaacttgcttatctccattgattct |
35526528 |
T |
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