View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4087_high_16 (Length: 247)

Name: NF4087_high_16
Description: NF4087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4087_high_16
NF4087_high_16
[»] chr8 (2 HSPs)
chr8 (70-220)||(12933811-12933961)
chr8 (93-130)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (70-220)||(14177081-14177231)
chr4 (70-220)||(28608644-28608794)
chr4 (78-131)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (63-100)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (63-100)||(796698-796735)
chr6 (63-100)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (63-100)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 12933811 - 12933961
Alignment:
Q  70 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 168  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  12933811 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 12933909  T
Q  169 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggta 220  Q
    |||||||||| |||||  | |||||||| || || |||||||| || |||||    
T  12933910 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggta 12933961  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  93 catggagatttggaagaggagatttatatggagcaacc 130  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 14177081 - 14177231
Alignment:
Q  70 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 168  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  14177081 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 14177179  T
Q  169 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggta 220  Q
    |||||||||| |||||  | |||||||| || || |||||||| || |||||    
T  14177180 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggta 14177231  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 220
Target Start/End: Complemental strand, 28608794 - 28608644
Alignment:
Q  70 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 168  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  ||||||||||||||| ||| || || ||||| | ||| |||| |    
T  28608794 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggttt 28608696  T
Q  169 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggta 220  Q
    |||||||||| |||||  | |||||||| || || |||||||| || |||||    
T  28608695 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggta 28608644  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  78 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 131  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  63 gagcagttggatgtgaaaactgcatttcttcatggaga 100  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  63 gagcagttggatgtgaaaactgcatttcttcatggaga 100  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  63 gagcagttggatgtgaaaactgcatttcttcatggaga 100  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  63 gagcagttggatgtgaaaactgcatttcttcatggaga 100  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

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