View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4087_low_1 (Length: 983)
Name: NF4087_low_1
Description: NF4087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4087_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 692; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 17 - 848
Target Start/End: Original strand, 4721406 - 4722245
Alignment:
| Q |
17 |
agaagatccagattaaagagtatgcaccatgacgacaaatggaatatcatggcgataacccaacataaccacctaccaaattcaacatatatacaaatac |
116 |
Q |
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| T |
4721406 |
agaagatccagattaaagagtatgcaccatgacgacaaatggaatatcatggcgataacccaacataaacacctaccatattcaacatatatacaaatac |
4721505 |
T |
|
| Q |
117 |
gcacggacaagcaaaacagataggcatcttctctgctaaaaggaacgtatgaattaccaaaatctaagataaggtattagtatcaaagtcgatataatga |
216 |
Q |
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| T |
4721506 |
gcacagacaagcaaaacagataggcatcttctctgctaaaaggaatgtatgaattaccaaaatctaagataaggtattagtatcaaagtcgatgtagtga |
4721605 |
T |
|
| Q |
217 |
t--caattacaaaatattaacattagatatgatgtattcatatagataaggaattatgatcaaagcattcttcacgataagttgttttcatctatgcatc |
314 |
Q |
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| T |
4721606 |
tgtcaattacaaaatattaacattagatatgatgtattcatctagataaggaattatgatcaaagcattcttcacgataagttgttttcatctatgcatc |
4721705 |
T |
|
| Q |
315 |
aaataccatgtgatcgaaattggaagcaaaacgtagaatatgaggatcttgattcttaattgcattcaaatgatatatgttcttcttttaacgtggtcct |
414 |
Q |
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| T |
4721706 |
aaataccatgtgatcgaaattggaagcaaaacgtagaatatgaggatcttgattcttaattgcattcgaatgatatatgttcttcttttaacatggtctt |
4721805 |
T |
|
| Q |
415 |
atcttcaacaaatgatacccgaatttcggcaactctggaaactcttcgttctgaaagctcaacttgagtaaaggctactggtgtacctttttcctctagt |
514 |
Q |
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| T |
4721806 |
atcttcaacaaatgatacccgaatttcggcaactctggaaactcttcgttctgaaagctcaacttgagtaaaggctactggtgtacctttttcctctagt |
4721905 |
T |
|
| Q |
515 |
gaggaaagaagactttcttcctctaagcttctcttgt-gttgtcacccaaattatttgagccttgaaacaatggccccattaaaatatatgatgttgttg |
613 |
Q |
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| T |
4721906 |
gaggaaagaagactttcttcctctaagcttctcttgtcgttgtcacccaaattatttgagccttgaaacaatggccccattaaagtatatgatgttgttg |
4722005 |
T |
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| Q |
614 |
tccctaacgacaatcattttcctaaaatcagacaatatgtggtcatactatg-tttttacaagacatgtcaaatgacatcttggggtatagtcactataa |
712 |
Q |
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| T |
4722006 |
tccctaacgacaatcgttttcctaaaatcagacaatatgttgtcatactatgttttttaaaagacatgtcaaatgacatcttggggtatagtcactacaa |
4722105 |
T |
|
| Q |
713 |
acgttacataaagataaatggac----aatgnnnnnnnntcattagagacaaacctgttgtaagggagcatgacacaggagaagcctgtccatcacgcag |
808 |
Q |
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| T |
4722106 |
acgttacataaagataaatggacaaggaatgaaaaaaaatcattagagacaaatctgtgctaagggatcatcacacaggagaagcctgtccatcacgcag |
4722205 |
T |
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| Q |
809 |
ggtaaagggaaaatcttcgactacactgcctcgtgcctac |
848 |
Q |
| |
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| T |
4722206 |
ggtaaagggaaaatcttcgactacactgcctcgtgcctac |
4722245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 124 - 640
Target Start/End: Original strand, 54923478 - 54923999
Alignment:
| Q |
124 |
caagcaaaacagataggcatcttctctgctaaaaggaacgtatgaattac---caaaatctaagataaggtattagtatcaaagtcgatataatgat--c |
218 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||| |||||||| ||| ||||||||| |||| | ||||| | |
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| T |
54923478 |
caagcaaaacagataggtatcttctctgctaaaaggaaaatatgaattactaccaaaatcttagataaggaattggtatcaaagccgatgttatgatgtc |
54923577 |
T |
|
| Q |
219 |
aattacaaaatattaacattagatatgatgtattcatatagataaggaattatgatcaaagcattcttcacgataagttgttttcatctatgcatcaaat |
318 |
Q |
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| T |
54923578 |
tattaccatatattaacattagctacaatatattcatttatataaggaattaatatcaaagcatatgtcacctcgtactgttttcatctaagcattaaat |
54923677 |
T |
|
| Q |
319 |
accatgtgatcgaaattggaagcaa-aacgtagaatatgaggatcttgattcttaattgcattcaaatgatatatgttcttcttttaacgtggtcctatc |
417 |
Q |
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| T |
54923678 |
accatgtcc-cgtaagtaaaaacgacaacttagaagatgaggatcttgattcttaattgtcttcgaataatatatgttcttcttttaatgtggtcctatc |
54923776 |
T |
|
| Q |
418 |
ttcaacaaatgatacccgaatttcggcaactctggaaactcttcgttctgaaagctcaacttgagtaaaggctactggtgtacctttttcctctagtgag |
517 |
Q |
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||||| || ||||||| | |||| |||||||||| |||||||| |||||| ||||||||| |||||||||| || |||||||| | || |||||||| |
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| T |
54923777 |
ttcaataacagatacccaactttctgcaactctggtaactcttccttctgagagctcaactaaagtaaaggctcttgctgtaccttctgccactagtgag |
54923876 |
T |
|
| Q |
518 |
gaaagaagactttcttcctctaagcttctcttgt-gttgtcacccaaattatttgagccttgaaacaatggccccattaaaatatatgatgttgttgtcc |
616 |
Q |
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|| | | ||||||| ||| |||||||||||||| | ||| | |||| | ||||| ||| | ||||||||||||||| || ||||||| ||||| |||| |
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| T |
54923877 |
gacataggactttcaacctttaagcttctcttgtcctcgtcgctcaaact-tttgaccctaggaacaatggccccattcaagtatatgacgttgtcgtcc |
54923975 |
T |
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| Q |
617 |
ctaacgacaatcattttcctaaaa |
640 |
Q |
| |
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| T |
54923976 |
ccaatgacaatcattttcctaaaa |
54923999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 847 - 965
Target Start/End: Original strand, 4722284 - 4722402
Alignment:
| Q |
847 |
acaaacatataagccagcaagctctcaacatgaattatccagtttttcacgatctaaagcatagaaaagaggttttggaaggctagaggctggggtaaaa |
946 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4722284 |
acaaacatataagccagcaagctctcgacatgaattatccagtttttcacgatgtaaagcatagaaaagaggttttggaaggctagaggctggggtaaaa |
4722383 |
T |
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| Q |
947 |
catttggaaacaaggttcc |
965 |
Q |
| |
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||||||||||||||||||| |
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| T |
4722384 |
catttggaaacaaggttcc |
4722402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 374 - 424
Target Start/End: Original strand, 54916016 - 54916066
Alignment:
| Q |
374 |
ttgcattcaaatgatatatgttcttcttttaacgtggtcctatcttcaaca |
424 |
Q |
| |
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|||| ||||||| ||| ||||||||||||||| |||||||| ||||||||| |
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| T |
54916016 |
ttgccttcaaataatacatgttcttcttttaaggtggtcctgtcttcaaca |
54916066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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