View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4087_low_12 (Length: 349)
Name: NF4087_low_12
Description: NF4087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4087_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 83 - 339
Target Start/End: Original strand, 44594292 - 44594552
Alignment:
| Q |
83 |
tttccacgaggagtttgttgttgattctgaagcaaaatattcatatttatatttgaaatatttgcaggaccatttgaaaaaactctcccacccgccnnnn |
182 |
Q |
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| T |
44594292 |
tttccacgaggagtttgttgttgattctgaagcaaaatattcatatttatatttgaaatatttgcaggaccatttgaaaaaactctcccacccgccatat |
44594391 |
T |
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| Q |
183 |
nnnnnnnn----ttatgatcacaaagctaaattcaaccaaagttaaacnnnnnnnnnctttcttatatcttaacgtgccataataggtatatagctacaa |
278 |
Q |
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| T |
44594392 |
atatatataaatttatgatcacaaagctaaattcaactaaagttaaacttcttttttctttcttatatcttaacgtgccataataggtatatagctacaa |
44594491 |
T |
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| Q |
279 |
gctagctaggaatgaatgattaaagatctaagacttatggcggaagaaactggtgatgatg |
339 |
Q |
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| T |
44594492 |
gctagctaggaatgaatgattaaagatctaagacttatggcggaagaaactggtgatgatg |
44594552 |
T |
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