View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4087_low_14 (Length: 293)
Name: NF4087_low_14
Description: NF4087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4087_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 457775 - 457500
Alignment:
| Q |
17 |
cagctagtatagtcacaatcactgttaagagaggattaaacattgcagagaagagaggtcatctctttgtaatgcaccatgcttggagacaaaatacaac |
116 |
Q |
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| T |
457775 |
cagctagtatagtcacaatcactgttaagagaggattaaacattgcagagaagagaggtcctctctttgtaatgcaccatgcttggagacaaaatacaaa |
457676 |
T |
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| Q |
117 |
tgctgatcccataattccctgcaaaatgtatttatttattacaacaaattaggccacttaaaatgtattcatttat----ttatatttaagtattatcat |
212 |
Q |
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| T |
457675 |
tgcagaccccataattccctgcaaaatgtatttatttattacaacaaattaggccacttaaaatgtattcatttatttatttatatataagtattatcat |
457576 |
T |
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| Q |
213 |
gaaaaa----taaccac--atactgcatataaagtgcacccaaattgaagtagagaattaattttccatgcattca |
282 |
Q |
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| T |
457575 |
gaaaaataattaaccacatatactgcatataaagtgcacccaaattgaagtagagaattaattttccatgcattca |
457500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 24 - 280
Target Start/End: Complemental strand, 475433 - 475171
Alignment:
| Q |
24 |
tatagtcacaatcactgttaagagaggattaaacattgcagagaagagaggtcatctctttgtaatgcaccatgcttggagacaaaatacaactgctgat |
123 |
Q |
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| T |
475433 |
tatagtcacaagaattgttaagagaggactaaacactgcagagaagagaggtcctctctttgtaatgcaccatgcttggagacaaaatacaaatgcagac |
475334 |
T |
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| Q |
124 |
cccataattccctgcaaaatgtatttatttattacaacaaattaggccacttaaaatgtattcatttat-ttatatttaagtatt--------atcatga |
214 |
Q |
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| T |
475333 |
cccataattccctgcaaaatgtatttatttatt---acaaattaggccactcaatgtgtattaattaataatatatacaagtattgttgtatcatcatgg |
475237 |
T |
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| Q |
215 |
aaaataaccacatactgcatataaagtgcacccaaattgaagtagagaattaattttccatgcatt |
280 |
Q |
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| T |
475236 |
aaaatatgggcatactgcatataaagcgcaaccaaattgaagtagagaattaattttccatgcatt |
475171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 45 - 282
Target Start/End: Complemental strand, 449455 - 449229
Alignment:
| Q |
45 |
gagaggattaaacattgcagagaagagaggtcatctctttgtaatgcaccatgcttggagacaaaatacaactgctgatcccataattccctgcaaaatg |
144 |
Q |
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| T |
449455 |
gagaggactaaacattgcagagaagagaggtcctctctttttaatgcaccatgcttggagacaaaataaaactgctgatcccataattccctgaaaaata |
449356 |
T |
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| Q |
145 |
tatttatttattacaacaaattaggccacttaaaatgtattcatttatttatatttaagtattatcatgaaaaat-aaccacatactgcatataaagtgc |
243 |
Q |
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|||||||| |||||||| |||||| | || |||| ||||| |||||| ||| |||||||||| | | |||||||||||||||||||||| |
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| T |
449355 |
tatttatt-------acaaattaagccactgatgatatattaattta-ttatat----atatcatcatgaaaattcatccacatactgcatataaagtgc |
449268 |
T |
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| Q |
244 |
acccaaattgaagtagagaattaattttccatgcattca |
282 |
Q |
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| || | ||||| |||||| ||||| ||||||||||||| |
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| T |
449267 |
aaccgagttgaactagagatttaatcttccatgcattca |
449229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 146
Target Start/End: Complemental strand, 480892 - 480773
Alignment:
| Q |
27 |
agtcacaatcactgttaagagaggattaaacattgcagagaagagaggtcatctctttgtaatgcaccatgcttggagacaaaatacaactgctgatccc |
126 |
Q |
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||||||||| | ||| || |||||||||||||| |||||||||||||||| |||||||| ||||||||||||||| ||| | ||| ||||| |||||| |
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| T |
480892 |
agtcacaattaatgtgaaaagaggattaaacatagcagagaagagaggtcctctctttgaaatgcaccatgcttgaagatagaatgttactgcagatccc |
480793 |
T |
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| Q |
127 |
ataattccctgcaaaatgta |
146 |
Q |
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| T |
480792 |
atgattccctacaaaatgta |
480773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 468854 - 468757
Alignment:
| Q |
48 |
aggattaaacattgcagagaagagaggtcatctctttgtaatgcaccatgcttggagacaaaatacaactgctgatcccataattccctgcaaaatgt |
145 |
Q |
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|||| ||||||| |||||||||||||||| |||| ||| ||||||||||||||||||||| ||| ||||| |||||||||| |||||||||||||| |
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| T |
468854 |
aggagtaaacatagcagagaagagaggtcctctccttgaaatgcaccatgcttggagacagtatattactgcagatcccataactccctgcaaaatgt |
468757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 480692 - 480640
Alignment:
| Q |
222 |
ccacatactgcatataaagtgcacccaaattgaagtagagaattaattttcca |
274 |
Q |
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|||||||||||||||||| |||| ||||||||||| | |||||| || ||||| |
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| T |
480692 |
ccacatactgcatataaaatgcaaccaaattgaagcaaagaattgatcttcca |
480640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 27489864 - 27489968
Alignment:
| Q |
48 |
aggattaaacattgcagagaagagaggtcatctctttgtaatgcaccatgcttggagacaaaatacaactgctgatcccataattccctgcaaaatgtat |
147 |
Q |
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|||| ||||||| |||||||| ||||||| ||| ||| ||||||||||||||||||||| || | ||||| |||||||||| ||||| |||||||||| |
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| T |
27489864 |
aggagtaaacatagcagagaatagaggtcctcttcttgaaatgcaccatgcttggagacacaaggctactgcggatcccataactccctacaaaatgtat |
27489963 |
T |
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| Q |
148 |
ttatt |
152 |
Q |
| |
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||||| |
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| T |
27489964 |
ttatt |
27489968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 27490042 - 27490100
Alignment:
| Q |
222 |
ccacatactgcatataaagtgcacccaaattgaagtagagaattaattttccatgcatt |
280 |
Q |
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|||||||||| ||||||| |||| |||||||||||||||||| |||| ||||| ||||| |
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| T |
27490042 |
ccacatactgaatataaaatgcaaccaaattgaagtagagaagtaatcttccacgcatt |
27490100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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