View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4087_low_19 (Length: 247)
Name: NF4087_low_19
Description: NF4087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4087_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 40774399 - 40774164
Alignment:
| Q |
1 |
cttcctaaccccacaggataaaatggaccaccaaccatcttaacaagatcccttgttgcttgtgcaacaatgtcagaacatgaaacaacaccaggacatg |
100 |
Q |
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| T |
40774399 |
cttcctaacgccacaggataaaatggaccaccaaccatcttaacaagatcccttgttgcttgtgcaacaatgtcagaacatgaaacaacaccaggacatg |
40774300 |
T |
|
| Q |
101 |
ctatttccaatgcattttttattttattaacgacgtcgtatccatcccctgagagggagaggttgagttctgcgtctttttcagcgtgagggttgtaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40774299 |
ctatttccaatgcattttttattttattaacgacgtcgtatccatcccctgagagggagaggttgatttctgcgtctttttcagcgtgagggttgtaagc |
40774200 |
T |
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| Q |
201 |
cgttgaagagataaggaccgatccatcacaaccgtc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
40774199 |
cgttgaagagataaggaccgatccatcacaaccgtc |
40774164 |
T |
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