View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4087_low_2 (Length: 890)
Name: NF4087_low_2
Description: NF4087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4087_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 485
Target Start/End: Complemental strand, 2573256 - 2572777
Alignment:
| Q |
16 |
aatcccaccttcctctactcttgctcgaacataattgatttccatttctttcagctttttctcaactgctcccatgctctcacactacacatcaaccaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2573256 |
aatcccaccttcctctactcttgctcgaacataattgatttccatttctttcagctttttctcaactgctcccatgctctcacactacacatcaaccaat |
2573157 |
T |
|
| Q |
116 |
tcaaagttcaaacacgaaattacatattaaatcgttaataaactctaaatgaaaaactatttgaaagaattcgagttcgatttcttataaaacaggtatt |
215 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
2573156 |
tcaaagttcaaacacaaaattacatattaaatcgttaataaactctaaatgaagaactgtttgaaagaattcgagttcgatttctcataaaacaggtatt |
2573057 |
T |
|
| Q |
216 |
gattaaactatacttgcttacctcgcgatcgaactccgaattaccagagctctttttcctgagaatcgaagagttaacaacaac-caaaaaagctaaaac |
314 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
2573056 |
gattaaactatacttgcttacctcacgatcgaactccgaattaccagagctctttttcctgagaatcgaatagttaacaacaacaaaaaaaagctaaaac |
2572957 |
T |
|
| Q |
315 |
ttgtataatcccttactacagttgcatgatgtagtaccattaaattaagaaagttgcatagtaatattttttggagctttaaatatgaaaaaatgaagtg |
414 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2572956 |
ttgtataatcctttactacaattgcatgatgtagtaccattaaattaagaaagttgcatagtaatattttttggagctttaaatatgaaaaaatgtagtg |
2572857 |
T |
|
| Q |
415 |
tccaaagtatgaacctcggttgctgc-----ttatggattgtcc----ctatcaaccgaggaaagctcacatgaactaat |
485 |
Q |
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| T |
2572856 |
tccagagtttgaatctcgattgctacatatattatggattgtccctatctatcaaccgaggaaagctcacatgaactaat |
2572777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 495 - 887
Target Start/End: Complemental strand, 2572741 - 2572346
Alignment:
| Q |
495 |
taaattacatgatttggctctatattctattgtgatttgaggcaaccttagaggataagatccttaaaagccattgcatatccttaaaaagcatcacaaa |
594 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2572741 |
taaattacatgatttgactctatattctattgtgatttgaggcaaccttagaggataagatccttaaaagccattgcatatccttaaaaaggatcacaaa |
2572642 |
T |
|
| Q |
595 |
acgtgtctatgatgactaggtgagtgttttagttttaaatttagtgtgatc---tatatttagttttaaatttggatttttctatgcgtcactttaggtt |
691 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572641 |
acgtgtctatgatgactaggtgagtgttttagttttaaatttagtgtgatctattatatttagttttaaatttggatttttctatgcgtcactttaggtt |
2572542 |
T |
|
| Q |
692 |
caatgtattttttatcaagttccttcatttattgaagtacgtcttctattttggttctttctaagtaacannnnnnnnccaaatttgaaacgtaatcaat |
791 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
2572541 |
caatgtattttttatcaagttccttcatttattgaagtacgtcttctattttggttctttctaagtcacattttttttccaaatttgaaacgtaatcaat |
2572442 |
T |
|
| Q |
792 |
aattttaattttagggaaaatctgacctggaaagatatgtgattatcctttggattaatttccttcttccttggtaacgtctctgggttctctgct |
887 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572441 |
aattttaagtttagggaaaatctgacctggaaagatatgtgattatcctttggattaatttccttcttccttggtaacgtctctgggttctctgct |
2572346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 817 - 865
Target Start/End: Original strand, 44546148 - 44546196
Alignment:
| Q |
817 |
cctggaaagatatgtgattatcctttggattaatttccttcttccttgg |
865 |
Q |
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||||||| || || ||||||||||||| ||||||||||||||||||||| |
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| T |
44546148 |
cctggaatgagatatgattatcctttgtattaatttccttcttccttgg |
44546196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 825 - 865
Target Start/End: Original strand, 44555771 - 44555811
Alignment:
| Q |
825 |
gatatgtgattatcctttggattaatttccttcttccttgg |
865 |
Q |
| |
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||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
44555771 |
gatatatgattatcctttggattaatttcgttcttccttgg |
44555811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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